Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0311 ATGGCTTTTTCAACTGGGAATGGCACCACTACCACTGGCTCTGGATCTCCTTGTGGGGCATGCAAGTTCCTCAGACGAAAGTGTGCAATTGACTGCATCTTTGCACCTTACTTTTGTTCCCAACAAGGAGCTGCTAAATTTGCAGCCATCCATAAAGTGTTTGGTGCTAGCAACGTTTCCAAGTTGCTCTTCCATATACCAGCTCATCATCGTTGTGAGGCTGTGGTAACAATTACTTATGAGGCACAAGCTCGTATAAGAGATCCTGTTTATGGTTGTGTCTCCCATATTTTTGCCTTACAGCAACAGGTAGCATGCTTGCAGGCACAACTGATCCATATGAAGGCACAACTGGCTCAGAACCTGATGGAGTCCAGGAACTTGGAGAATCAGTGGTCAGGGAATGTTGTTGGACAACAATTCAATCCATTTTGTCCCATTTCCATGAACCCTATATCTCCTCTGAGCTCGCTTGATTCAATTGACTATAGCAAAATCAGAGATTGTATGAGCACGCATGATGTACAAAGAAAAGAGGATTTCTCATTTCAAGCTTGTTCTAAGAAAATATCATACGATAATGACTTGGGTGAGCTGCAAGAATTGGCACTCAGGATGATGGGGAACTATAATTAG 636 0.4324 MAFSTGNGTTTTGSGSPCGACKFLRRKCAIDCIFAPYFCSQQGAAKFAAIHKVFGASNVSKLLFHIPAHHRCEAVVTITYEAQARIRDPVYGCVSHIFALQQQVACLQAQLIHMKAQLAQNLMESRNLENQWSGNVVGQQFNPFCPISMNPISPLSSLDSIDYSKIRDCMSTHDVQRKEDFSFQACSKKISYDNDLGELQELALRMMGNYN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0311 211 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 207 - -
Apr8g0311 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 10 207 - -
Apr8g0311 211 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Apr8g0311 211 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0311 Apr-Chr8 2598818 2600347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0311 4 209 AS2 family AT2G42430 53.279 4.07e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr8g0311 LOB 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0311 K13944 - gmx:100801508 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0311 8 2598818 2600347 Apr8g0311 8 2598818 2600347 ECH
Apr4g0014 4 140176 141651 Apr8g0311 8 2598818 2600347 PCT