Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0308 ATGGAATTCGTAAGCTATCAAGATGACTCCTCCAAGAGCTCCAGCGAAGAAATTGATCGATCATCTGAGCAGAATGATGACATGGTGGGAACTGGCAGATCCTACGAGTGTGTGTTTTGTAAAAGAGGCTTCACAACCGCACAAGCTTTGGGTGGTCACATGAACATACACAGAAAAGATAGAGCCAACAAAGCCAAACCCAATTTTCCTCCTTCAAGTTCAAGCAAGGTTGATGAGAATAGTTATGCAGATCTTGGGTTTTATTCAGCAATTAATCCAACCCATCTTGCAAAGGGGAATTACTATTCCGCTGCTCCTGATCGAGAGGTAGACACTAATTACAATTACTACCATCAAATATATCTTCCTTCACACACATGTGGTGCTAGACCTTCACATGTACAATATAGTGAGGTGTTGTGTGTAGAGAACCAAAGGGAACCTGAGTTCCTATTTGGACAAGATTGGAGGCAGAGGGGTTTGAGCTTGTACACTAACCCTTTATGTGTACATGAAAATAAAGACAAGATAGAAAACAACAGTGAAGAGGATGACCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 591 0.4179 MEFVSYQDDSSKSSSEEIDRSSEQNDDMVGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKAKPNFPPSSSSKVDENSYADLGFYSAINPTHLAKGNYYSAAPDREVDTNYNYYHQIYLPSHTCGARPSHVQYSEVLCVENQREPEFLFGQDWRQRGLSLYTNPLCVHENKDKIENNSEEDDLDLELRLGHHP* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0308 196 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 5 196 - -
Apr8g0308 196 PANTHER OS07G0101800 PROTEIN 5 196 - -
Apr8g0308 196 Pfam C2H2-type zinc finger 35 59 - -
Apr8g0308 196 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Apr8g0308 196 Gene3D Classic Zinc Finger 9 86 - -
Apr8g0308 196 MobiDBLite consensus disorder prediction 12 26 - -
Apr8g0308 196 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Apr8g0308 196 MobiDBLite consensus disorder prediction 1 29 - -
Apr8g0308 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0308 Apr-Chr8 2581164 2581754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0308 35 96 C2H2 Transcription Factor Family AT5G43540 50.769 1.00e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0308 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0308 - - ccaj:109812060 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0308 8 2581164 2581754 Apr8g0308 8 2581164 2581754 ECH
Apr4g0008 4 108789 109340 Apr8g0308 8 2581164 2581754 PCT