Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0307 ATGGAAGGAAACTACCTTAACAGAAACTCTCTCCAGAGAGAGGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCCTGTAGCTTTTGCAAAAGAGAGTTCAGGTCTGCACAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGGTTGAGATCATCCTTATCTTCATGGGTTTCTGAGTGCCCTAAACCTAACCCTAGCACTAAGCCCAACAACCCAAATCTTCTTCCATCCTCTTCTTCACCATGTCCTTTATCTGACGAACTTTTGAATCATGCACATCCTTCTCCACTTTGCAGTCCTTGTCTCACTTTGTCTTCTTCATCATCCTCTCTAGCTTCTACCAATGGAGATAAGAAACCAAGACTCACACTTTCTCATCAGTTTCCTCTTTTGAATCCTCAAAGTAGGGATATTATGAACACAAGGAGTGGTTTCAGTGTTGATGAGGAAATGAAGGGTTGTGAAGAGGAGGAGGAGGAGGAGCACCAGGTTTTGAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGGTTGCTTAAACACCAAGATCAGGAGAAGTTAGATCTGGAGCTTCGTCTCGGGCATTGA 633 0.4376 MEGNYLNRNSLQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNNPNLLPSSSSPCPLSDELLNHAHPSPLCSPCLTLSSSSSSLASTNGDKKPRLTLSHQFPLLNPQSRDIMNTRSGFSVDEEMKGCEEEEEEEHQVLKNNEQNITLELGIGLLKHQDQEKLDLELRLGH* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0307 210 MobiDBLite consensus disorder prediction 69 93 - -
Apr8g0307 210 Pfam C2H2-type zinc finger 33 57 - -
Apr8g0307 210 Coils Coil 168 188 - -
Apr8g0307 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Apr8g0307 210 PANTHER OS07G0101800 PROTEIN 19 210 - -
Apr8g0307 210 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 19 210 - -
Apr8g0307 210 SMART c2h2final6 33 55 IPR013087 -
Apr8g0307 210 Gene3D Classic Zinc Finger 18 77 - -
Apr8g0307 210 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Apr8g0307 210 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0307 Apr-Chr8 2572162 2572794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0307 21 209 C2H2 Transcription Factor Family AT3G23130 40.000 1.69e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0307 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0307 - - gmx:102662947 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0007 4 98466 99095 Apr8g0307 8 2572162 2572794 PCT