Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0306 ATGGTTGTTTCCCGTTTATCAAAATTACATCCCAAGGATATGGAGGCTCCTACTGACGGAGTTGATGACATGACTAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAAGTAGATACAAGATCAATGAAATATATACTTATACTGGTAATATTCTCATTGCAATCAATCCTTTCCAAAGTCTTCCACACCTCTATGAAACTAATGTAATGAAAAAATACAAGGGAGCAACAATTGCAGACTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTACTGAGGAGAAAAGCAACTGTATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAATACCTGGCATATTTGGGTGGTCACATTGTATCTGAAGGACGGACTGTTGAAAAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCCGGTGCAGCTGTTAGAACTTATCTGCTTGAGAGATCTCGCGTTTGCCAGATCTCAGATCCTGAGCGTAACTATCACTGCTTTTACCTTCTTTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCATTACCTTAATCAATCCAATTGCTATGAATTAGTTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAAAGAGCCATGGATATTGTGGGAATCAGTCAGGAAGAACAGGATGCAATTTTCCGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGAAAATGATTCATCAGTTTTGGAAGGTGAAGAATCCAAGTTCCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATGCTTTGGAAGGTGCACTTCGTGAGCGTGTGATGATTACCCCAGAAGAAATCATCAAAAGAAGTCTTGATCCTCTTGGTGCAACAGTTGGCAGAGATGGTTTAGCCAAAACACTATATTCTCGTTTATTTGACTGGTTAGTCAATAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAGTGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACAAATAGTTTTGAGCAGTTTTGTATTAATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTAACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCGGGTGGAATCATCGCTCTTCTTGACGAAGCTTGTATGTTTCCCAAGTCAACTCATGAAACATTTGCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGACACGCTCAGACTTCACTGTTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGAGCATTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGAAATTCTAAGTGCTTCCAAATGTTCATTTGTATCAGGCCTTTTTCCTCCACTTTCTGAGGAGACAGCCAAATCTTCTAAATTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACAATTGATGGATACACTCAATCTGACAGAGCCGCACTATATTAGATGTGTGAAGCCAAATACTCTATTAAAACCTTGCATATTTGAGAATTTGAATGTCATCCAACAATTACGGTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAGTGTGCTGGATTCCCCACTCACTGGACCTTCCATGAATTTCTAAATCGATTAGGCATTCTTGCTCCGGAGGTTCTTCGAGGGAACTTTGATGAAAAGGATTCGTGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACTCAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCGGAGAGCATGCCTGCTTAGCAATTCCGCAACAGTTATCCAAAAGCAGATTAAAACTCATTTTAGTCAGAAAACATATATTGCATTGAGAAAGTCCTCTGTGTTTGTCCAATCCATTTGCAGAGGAGAATTGGCTCGGAGATCATATTATCTCTTGAAGAGGGAAGCAGCTGCAATCAGAATTCAAAAGTATACGCGTGGAACACTAGCCAGGAAATGTTACACTGAAATAAAGATTTCTGCCATTGTCTTGCAGACAGGTTTTCGACTAATGAGTGCTTATGATAAATTGAGATATAAAAAGCGAAATAGTGCTGCAACAATAATTCAGTCCTATTGGCGCCGACATAAAGCTCTCGGCGACTATCAGAAACTTAAGAAAACAATCACTTCACAAAATGTCAATCACTCCAGTGATAAACATGAACAGAAGGTTTTGGAGAAATCAGTGGAAAATGAAAATCCTTCTGTGGAAGAATCTTCAAATTATTTCCGAAAAGAATCCTCAAGTCCTTTACAAGATGATGGAAGCATTGAAGCTATCATGGATTCCTCTAGTCCTCTCAAAGACTCTGAAAAAATTGAGGTTCTTACTGTAGGAATAACAAACTTGAAGGTCAAGTTACAGGCGGAAAAACAAAGAGCTGATGAATATGAAAGGAAATATGTTGAAGCTCAAGGATCTAACGAAGAGTTGCGAAAAAAGTTAGAAGAAACTGAAAAAAGAGTATATCAGCTTCAAGACTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGATGATCTTGAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGGGTTGATGTTGCTTCCAGTAACTCTGATACTTCATCCACAGACTCTGATTTCACATTTCCAGCTCCAGTTTCAAATCCAGAAGCTTTTTCTTCCCCGAAGCCAAATCCTATTCAGCTAGTAGTCCAGGATATCACAGCAGGGGATGGATCAGGATCTGAAACTGAAAAGGAGGGTTCATTTGATGATTTCTTCTAG 3102 0.3868 MVVSRLSKLHPKDMEAPTDGVDDMTKLAYLHEPGVLHNLESRYKINEIYTYTGNILIAINPFQSLPHLYETNVMKKYKGATIADLSPHVFAIAEAAYRAMITEEKSNCILVSGESGAGKTETTKMLMQYLAYLGGHIVSEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAVRTYLLERSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEENDSSVLEGEESKFHLQTTAELLMCDPNALEGALRERVMITPEEIIKRSLDPLGATVGRDGLAKTLYSRLFDWLVNKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGINWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFIKPKLTRSDFTVVHYAGEVQYQSEHFLDKNKDYVVPEHQEILSASKCSFVSGLFPPLSEETAKSSKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNTLLKPCIFENLNVIQQLRSGGVLEAVRIKCAGFPTHWTFHEFLNRLGILAPEVLRGNFDEKDSCKKILEKIGLTGYQIGETQIFLRAGQMAELDARRACLLSNSATVIQKQIKTHFSQKTYIALRKSSVFVQSICRGELARRSYYLLKREAAAIRIQKYTRGTLARKCYTEIKISAIVLQTGFRLMSAYDKLRYKKRNSAATIIQSYWRRHKALGDYQKLKKTITSQNVNHSSDKHEQKVLEKSVENENPSVEESSNYFRKESSSPLQDDGSIEAIMDSSSPLKDSEKIEVLTVGITNLKVKLQAEKQRADEYERKYVEAQGSNEELRKKLEETEKRVYQLQDSLNRMISSMSSQVAELKMILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPAPVSNPEAFSSPKPNPIQLVVQDITAGDGSGSETEKEGSFDDFF* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0306 1033 Coils Coil 887 935 - -
Apr8g0306 1033 MobiDBLite consensus disorder prediction 973 1033 - -
Apr8g0306 1033 ProSiteProfiles IQ motif profile. 715 744 IPR000048 GO:0005515
Apr8g0306 1033 SMART iq_5 691 713 IPR000048 GO:0005515
Apr8g0306 1033 SMART iq_5 739 761 IPR000048 GO:0005515
Apr8g0306 1033 SMART iq_5 787 809 IPR000048 GO:0005515
Apr8g0306 1033 SMART iq_5 714 736 IPR000048 GO:0005515
Apr8g0306 1033 Gene3D - 396 580 - -
Apr8g0306 1033 Gene3D Kinesin motor domain 22 619 IPR036961 -
Apr8g0306 1033 Gene3D - 743 789 - -
Apr8g0306 1033 Gene3D - 692 742 - -
Apr8g0306 1033 CDD MYSc_Myo11 33 677 IPR036018 -
Apr8g0306 1033 ProSiteProfiles IQ motif profile. 740 764 IPR000048 GO:0005515
Apr8g0306 1033 MobiDBLite consensus disorder prediction 823 840 - -
Apr8g0306 1033 Pfam Myosin head (motor domain) 21 677 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 Pfam IQ calmodulin-binding motif 716 735 IPR000048 GO:0005515
Apr8g0306 1033 Pfam IQ calmodulin-binding motif 790 804 IPR000048 GO:0005515
Apr8g0306 1033 Pfam IQ calmodulin-binding motif 742 760 IPR000048 GO:0005515
Apr8g0306 1033 Gene3D Myosin VI head, motor domain, U50 subdomain 269 558 - -
Apr8g0306 1033 ProSiteProfiles Myosin motor domain profile. 19 689 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 ProSiteProfiles IQ motif profile. 788 817 IPR000048 GO:0005515
Apr8g0306 1033 PANTHER MYOSIN 884 971 - -
Apr8g0306 1033 PANTHER MYOSIN 1 855 - -
Apr8g0306 1033 MobiDBLite consensus disorder prediction 818 871 - -
Apr8g0306 1033 Gene3D - 209 267 - -
Apr8g0306 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 813 IPR027417 -
Apr8g0306 1033 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 884 971 - -
Apr8g0306 1033 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 1 855 - -
Apr8g0306 1033 MobiDBLite consensus disorder prediction 841 861 - -
Apr8g0306 1033 Gene3D - 623 690 - -
Apr8g0306 1033 MobiDBLite consensus disorder prediction 973 1007 - -
Apr8g0306 1033 PRINTS Myosin heavy chain signature 49 68 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 PRINTS Myosin heavy chain signature 106 131 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 PRINTS Myosin heavy chain signature 153 180 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 PRINTS Myosin heavy chain signature 386 414 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 PRINTS Myosin heavy chain signature 439 467 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 SMART MYSc_2a 13 690 IPR001609 GO:0003774|GO:0005524|GO:0016459
Apr8g0306 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 743 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0306 Apr-Chr8 2554615 2568289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0306 2 939 Myosins gene family AT1G54560 64.545 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0306 K10357 - gmx:100803485 1806.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0306 8 2554615 2568289 Apr8g0306 8 2554615 2568289 ECH