Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0305 ATGATGGGTGAGAAGTTTTGTGTGAATGAAGAAGATAAGGGTGTGTTGGAATCTGTGTTGGGCGCTGATGCTGTTGCCTTCTTTATTTCGGCGGTTTCTAATAATGTCTTTTCTGGTGTGGTTGTTCCGCCGCCCGGTGCTGATCCGGCTCTCCGGCAGCGGCTGTGTCAGCTTGTTGAGGTTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGCGATGGGCATTGCCGTGATCCGAAAGGGGGTGGAGCCGGAGGCGAAAGGAATGTAATTGGGAAGGAGGATGATGAGGAGGTGAGAAAGAAGGTGCTGCAGAAGCTTGATGCCTGCTTTGCTGGGTCTGTATCCAAAGAGGTTAATTGTGCAAGGTTGGATAGGGTCTCAGATTTGCATATGTTTTACTTGACCTCGATGTGTTACATATTTGGTTTTGATTCGCCCTGTGGCCCTGGCAGTTCTTTCAAGTCTGCTAAATCAATTTGGGCTTCTGATGCTGCTAGTTGTTTGAACCAATTAGAGTCTAGATCGTTTTTGGGGAAATTAGCTGGTCTTCAAACGGTTGTTTTTGTTCCGCTAAAATCTGGGGTCGTCGAGCTTGGTTCATTGGAAATGGTACCTGAAGATCAGGGTGTTGTGGAGATGGTCAGGACAGCATTTGGAGAATCTAGTCCTGGACAGGCAAAGGTGTTTCCAAAGATTTTTGGGCATGAATTAAGCCTGGGGGATACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCAAAGGTGGAGGATGATTCTGGTTTCACTTCAGACTCTTATGAAGTTCAAGCACTAGGGGTGAACCATGGTTATGGAAATTCTTCCAATGGGACTTTAGGTGACAGTAATGAAGCTAAGTTGTTCCCTCAATTAAATCAAATGATTGCTGGGAATTTTAACCCTCAAGCGAGGGTTCCTTGCCTAGATCTTGGTAATGAAGACTCATGCTCAACTCATGCAGATGAGCGAAAGCCCCGGAAAAGAGGTCGCAAGCCTGCCAATGGGAGAGAGGAACCACTAAACCATGTTGAAGCAGAGAGACAAAGACGAGAGAAGCTTAACCAGAGGTTTTACGCATTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAAGCATCTCTTCTTGGTGATGCCATCACCTTCATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAACTGAGAAGAACATGATTAACAATAAAGACCAAAAGTTGTCATTGCCAGATATTGATTTCCAGGCGAGAGAGGACGATGCAGTTTTGACGGTGAGATGCCCCTTAGATATTCACCCTGTTTCTGGCGTTGTTAAAACCTTCAGGGAGCATCAAGTTGTGGCTCAAGAGTCCAGTGTTTCAACTACAGATGATAAGGTAATTCATACATTCTCCATAAGAACACAGGGAGGGGAGGCTGCTGCTATACAGTTGAAAGAAAAGCTTGAAGCATCCCTATGCAACAATTGA 1530 0.451 MMGEKFCVNEEDKGVLESVLGADAVAFFISAVSNNVFSGVVVPPPGADPALRQRLCQLVEVSKWNYAVFWQVAGLKSGGSALIWGDGHCRDPKGGGAGGERNVIGKEDDEEVRKKVLQKLDACFAGSVSKEVNCARLDRVSDLHMFYLTSMCYIFGFDSPCGPGSSFKSAKSIWASDAASCLNQLESRSFLGKLAGLQTVVFVPLKSGVVELGSLEMVPEDQGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGVNHGYGNSSNGTLGDSNEAKLFPQLNQMIAGNFNPQARVPCLDLGNEDSCSTHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLETEKNMINNKDQKLSLPDIDFQAREDDAVLTVRCPLDIHPVSGVVKTFREHQVVAQESSVSTTDDKVIHTFSIRTQGGEAAAIQLKEKLEASLCNN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0305 509 MobiDBLite consensus disorder prediction 335 368 - -
Apr8g0305 509 PANTHER MYC 2 507 IPR045084 GO:0003700|GO:0006355
Apr8g0305 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 406 IPR011598 GO:0046983
Apr8g0305 509 Coils Coil 403 423 - -
Apr8g0305 509 CDD bHLH_AtAIB_like 354 431 - -
Apr8g0305 509 Gene3D - 350 423 IPR036638 GO:0046983
Apr8g0305 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 424 IPR036638 GO:0046983
Apr8g0305 509 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 232 IPR025610 -
Apr8g0305 509 SMART finulus 363 412 IPR011598 GO:0046983
Apr8g0305 509 Pfam Helix-loop-helix DNA-binding domain 361 407 IPR011598 GO:0046983
Apr8g0305 509 PANTHER TRANSCRIPTION FACTOR BHLH3 2 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0305 Apr-Chr8 2535670 2538166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0305 2 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 49.020 5.44e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0305 bHLH-MYC_N 1.9e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0305 - - gmx:100819968 885.174