Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0298 ATGAAATTGAAACACATTTTTGAAAAGCAACCATCTCCTGATTCTTTACATTATGCATCAAGCAGTGGCTTGTCTGGGGATGATAAGGCGATTAGATATAGAGTTGCAACATCAAAGCATCGATATTTTTTGGCAAACCTTCACTTCTTCCCCATCAAAATTGACCTGAATTTTGTTCGCATTGTGATGGCAGAGATGGTGGGTACTTTTATTTTGATGTTCTGCGTATGTGGAATCATTACGAGCACACAATTACAAAATGGTGCAGTGGGCCTTCTAGAGTATGCAGCTACAGCAGGATTAACAGTGGTAGTGATTGTTTTCTCTATAGGGCCAATATCTTGTGCGCATGTTAACCCAGCTATCACAATAGCCTTTGCAACAATCGGTCAATTTCCATGGCTCAAGGTACCAGTTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTCTATGGCATAAAATCAGATGTTATGATGACTCAGCCACTCCAAGGGTGCAACTCTGCCTTCTGGGTGGAAGTTATTGCAACTTTCATCATCATGTTCCTCATTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTCTCTGGCTTAGTCGCTGGAATAGCAATTGGGCTTGCTGTACTAATCACAGGCCCAATCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCAGCAATTCTCTCTTGGAAATTTAAGGACATATGGATATACATCCTAGCTCCTTGTGTTGGAGCTGTAGCAGGAGCTCTATTGTATTGTTTCATACGTCTTAGAGGGCAACATTGTAGCACTTTGTCCTCCCCTAACATCAGTGATGTTGCTCGTCCCATACCCCTTTGCTCAAGGAGAAGTGGTCCCATGATTTTGCTGGTAGAGAAAAATTGGATTTTATTATCTAAAGGAGTAGAAGGGTTCAGTCAAAGATTAAGAACAAAAGGAATACCATATGATGTTCATCATAAGTTTCCACTGTAA 1014 0.4122 MKLKHIFEKQPSPDSLHYASSSGLSGDDKAIRYRVATSKHRYFLANLHFFPIKIDLNFVRIVMAEMVGTFILMFCVCGIITSTQLQNGAVGLLEYAATAGLTVVVIVFSIGPISCAHVNPAITIAFATIGQFPWLKVPVYIIAQTVGSMSATYIGSLVYGIKSDVMMTQPLQGCNSAFWVEVIATFIIMFLIAALTSESQSVGHFSGLVAGIAIGLAVLITGPISGGSMNPARSLGPAILSWKFKDIWIYILAPCVGAVAGALLYCFIRLRGQHCSTLSSPNISDVARPIPLCSRRSGPMILLVEKNWILLSKGVEGFSQRLRTKGIPYDVHHKFPL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0298 337 PANTHER AQUAPORIN NIP2-1 15 289 IPR034294 -
Apr8g0298 337 Pfam Major intrinsic protein 57 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 Gene3D Glycerol uptake facilitator protein. 34 277 IPR023271 -
Apr8g0298 337 PRINTS Major intrinsic protein family signature 60 79 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 PRINTS Major intrinsic protein family signature 99 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr8g0298 337 SUPERFAMILY Aquaporin-like 56 272 IPR023271 -
Apr8g0298 337 PANTHER AQUAPORIN NIP7-1-RELATED 15 289 - -
Apr8g0298 337 ProSitePatterns MIP family signature. 117 125 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0298 Apr-Chr8 2473024 2484436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0298 62 279 Major Intrinsic Protein MIP AT5G37820 39.726 9.36e-53 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0298 K09874 - mtr:MTR_1g070385 462.611