Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0296 ATGGCAACCGAAGAGCCCATTGTCCCCGTAGAATCTGCACCCGAACCAACCAAAGTCGAACCTCCACGCGAGAAGGACGACGAACCCAAACCTGAAGCCAAGGGCAAGAAAGCCAAAGACACCAAACCTAAGCGATCTTCCAAACCACGCAATCCTCCTTCTCATCCTTCATATGAAGAGATGATTAGGGATGCAATTGTGACGCTGAAGGAGAAAACAGGTTCAAGCCAATACGCGATTGCCAAGTTCAATGAAGAGAAGCACAAGCAGCTTCCACCCAACTTTAGGAAGCTCTTGCTTAACCATTTGAAGAAGCTTGTTGCTTCTGGAAAGCTCGTCAAAGTCAAAGGCTCCTTCAAACTTCCACCGACCAAACCCTCTCCATCTTCCCCGGTGAAGAAGAAGCCTGCCCCTGTCAAGCCCAAGCCTAAGCCTAAGCCCAAGCCTGCTTCCAAGGCTAAGGATACTAAAACAACTAAATCAACCACCAAGGCACCGGTGAAGCCCAAGCTGGCCGCAAAGCCCAAGCCCAAGGTTGCGGCCAAGCCGAAGGCTGCTGCGAAGCCCAAGGCCGCTCCTGCTAAGCCCAAGCCTGTTGCTGCGAAGCCCAAAGCTGCCAAGGGAGCTGCGAAGCCCAAGGCAAAGGAGAGACCAGCGAAGGTTGCAAAGACGTCGGCGAAGGCTTCGCCGGGGAAGAAAGCCCCTGCTTCTAAGGCAGCGCCGAAGAAAGTGGCTTCGACGAAGAAAACTGCGGTGAAGAGTGTGAAGCCGAAGAGTGTAAAGTCTCCGGCGAAGAAGGCTTCGACGAAGAGAGGAGGGAGGAAGTGA 828 0.535 MATEEPIVPVESAPEPTKVEPPREKDDEPKPEAKGKKAKDTKPKRSSKPRNPPSHPSYEEMIRDAIVTLKEKTGSSQYAIAKFNEEKHKQLPPNFRKLLLNHLKKLVASGKLVKVKGSFKLPPTKPSPSSPVKKKPAPVKPKPKPKPKPASKAKDTKTTKSTTKAPVKPKLAAKPKPKVAAKPKAAAKPKAAPAKPKPVAAKPKAAKGAAKPKAKERPAKVAKTSAKASPGKKAPASKAAPKKVASTKKTAVKSVKPKSVKSPAKKASTKRGGRK* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0296 275 SUPERFAMILY "Winged helix" DNA-binding domain 51 135 IPR036390 -
Apr8g0296 275 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0296 275 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0296 275 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0296 275 PRINTS Histone H5 signature 178 195 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0296 275 PRINTS Histone H5 signature 200 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0296 275 Gene3D - 50 127 IPR036388 -
Apr8g0296 275 PANTHER HISTONE H1.1 2 272 - -
Apr8g0296 275 MobiDBLite consensus disorder prediction 17 39 - -
Apr8g0296 275 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0296 275 MobiDBLite consensus disorder prediction 259 275 - -
Apr8g0296 275 Pfam linker histone H1 and H5 family 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0296 275 MobiDBLite consensus disorder prediction 114 275 - -
Apr8g0296 275 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0296 275 CDD H15 52 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0296 275 PANTHER HISTONE H1 2 272 - -
Apr8g0296 275 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0296 Apr-Chr8 2465352 2466642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0296 46 172 Single Myb Histone (SMH) Gene Family AT1G49950 32.558 8.23e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0296 K11275 - gmx:100795994 159.458