Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0295 ATGGCGGACGTTGAAACAGAGGTAGGTCAACCAGGAGTGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGAGTGGATCTCGATGCTCTCTTGGACATGTCCACCGATGATCTCGTCAAGCTCTTCTCTGCTCGTGCTCGCAGAAGGTTTCAACGCGGTTTGACACGCAAGCCTATGGCTCTCATCAAGAAGCTCCGTAAGAAACGAGAGGCTCCACCAGGTGAGAAGCCAGAGCCAGTAAGGACTCACCTTCGCAACATGATCATTGTGCCTGAGATGATTGGTAGCATTATTGGTGTTTACAACGGAAAGACCTTCAATCAAGTTGAAATTAAACCAGAAATGATTGGCCACTATCTGGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCCGGTATAGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA 456 0.4846 MADVETEVGQPGVPKKRTFKKFSFRGVDLDALLDMSTDDLVKLFSARARRRFQRGLTRKPMALIKKLRKKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0295 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 11 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 Pfam Ribosomal protein S19 50 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 151 - -
Apr8g0295 151 Hamap 30S ribosomal protein S19 [rpsS]. 48 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 TIGRFAM uS19_arch: ribosomal protein uS19 19 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Apr8g0295 151 Gene3D 30s Ribosomal Protein S19; Chain A 10 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Apr8g0295 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
Apr8g0295 151 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0295 Apr-Chr8 2458088 2460445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0295 1 151 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 92.715 1.66e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0295 K02958 - mnt:21407300 286.574