Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0290 ATGGTGATGAAGCGGTTGGTGAGAGTGAAGAGGGAAGCGATTGCAGCATGCATGACTTGCCCGCTATGCAACAAGTTGCTGAAAGATGCCACCGCCATTTCTCTATGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGACGAAGAACTGGAAAGCTGTCCAGTATGTGACATTGATTTGGGCATTGTTCCACTCGAGAAAATGAGGCCAGACAACAGTTTACAAGATTTAAGGAACAAAATTTTCCCTTTAAATAAAAGAAAGGTGAATACAGCTGTAGCTGTTCCCTCTGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACAGTCAACCATGACAGGTAGAAGAACAAAACCTACAAGAAAGGCTAGTACCATGCAGTCCTCTAGTTTCTCCATTGAAAAGATCATTAAAAAAGAAGAGGAATTGCTGGAAGATCGCCAAGATAGTTCAAGCTCACCTAACACTTCAAACAAATCTGCTAAGAATAATGGGCAGAGTTTGTCCCCTTGTAAAAATAGCCAATCCATATACAATAGAGGACCAGAGAATGTTGCTGAACCACAGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTATTTAGTGGAGGCTGCAAGTAGGAGTAAGTCTTTTAAGTCTAATGTGCAAGTGTCTGATGCTAAACAAGAACCCATGAAAGTGATGGACAGTGATTCTCAAGTGTTGAAAGCCAAAAATAAGGAAAATAAACGCAAGGCAAAATTTGAAGATGCAAAGATTAGTGTTGATCATGTCTCTTCCGATACAGCAAAAACCAACAAATTGCGAAGAGTTCGCCCAAAAAAGGAACCTGATTTTGGAGAATCAAGAATATCACCTCAAGCTGTTCTGGATGCTACTGACAGTAATCTCTCATGGAATGATTCAATTTGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGCACCCTTGCCCCAAATTTGTTCAAGTTATGTAAGAATCAAGAATGGAAGCATGCCTGTCTCATTTATCCAAAAATTATTGATGAAGAAACTAGACCTGAAGAGTGAAGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGGTTCCTTCACTTCAGGTACAAAATTTGATTGAATTATGGGTTGATACAGCATCGACAGGACGTAGAATTCCAGCAACCATAGGATCCTCAGGAAAAGATTTTGTAATGATCCTAACCTATGGTCGGAAGGTCCTACGCCGTTGA 1290 0.4023 MVMKRLVRVKREAIAACMTCPLCNKLLKDATAISLCLHTFCRKCIYDKITDEELESCPVCDIDLGIVPLEKMRPDNSLQDLRNKIFPLNKRKVNTAVAVPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKASTMQSSSFSIEKIIKKEEELLEDRQDSSSSPNTSNKSAKNNGQSLSPCKNSQSIYNRGPENVAEPQEAKLDLWKPLNYLVEAASRSKSFKSNVQVSDAKQEPMKVMDSDSQVLKAKNKENKRKAKFEDAKISVDHVSSDTAKTNKLRRVRPKKEPDFGESRISPQAVLDATDSNLSWNDSIWFSLVASENQEGDAPLPQICSSYVRIKNGSMPVSFIQKLLMKKLDLKSEDEVEIKCMGHPVVPSLQVQNLIELWVDTASTGRRIPATIGSSGKDFVMILTYGRKVLRR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0290 429 MobiDBLite consensus disorder prediction 166 198 - -
Apr8g0290 429 SUPERFAMILY RING/U-box 15 85 - -
Apr8g0290 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Apr8g0290 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Apr8g0290 429 MobiDBLite consensus disorder prediction 115 148 - -
Apr8g0290 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 - -
Apr8g0290 429 SMART ring_2 20 60 IPR001841 -
Apr8g0290 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Apr8g0290 429 MobiDBLite consensus disorder prediction 161 198 - -
Apr8g0290 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Apr8g0290 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0290 Apr-Chr8 2425132 2430569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0290 6 348 C3H Transcription Factor Family AT2G30580 51.594 5.24e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0290 K16277 - gmx:100777543 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1012 4 8310226 8316439 Apr8g0290 8 2425132 2430569 PCT