Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0282 ATGGAAGTTGGTCTGAAGAAGGAGAAGATGGTGTTTGAGGAAACTGACCTCAGGCTGGGCCTGGGACTGGGACTGCCTGGAAATGGAGCCACAGCAACTGAAGCAGAAGGAGTAAGAAAGAGAGGGTTCTCTGAAACTGAAACTGAGACTGAAACAACCACTGTGGATTTGATGCTTAACCTCTCCCCCAAGGAAGGTGCTGCTGCTACTACTGCTGCTGCAGGAGCAGATCCACGTGATCATAAGCCAAAGCCTTCACCTAAGGAGAAGACCCTTCTCATTTCTGATCCCACCAAGCCTCCTGCCAAGGCGCAAGTGGTGGGTTGGCCACCCGTGCGGTCTTCCCGGAAGAACATGTTTGCAGCCCAGAAGAGCAACGGAGAAGAGAGTGAGAAGAACAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGACGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGGAAATTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCGTGGAAAAATGCAAGAACCGGAGCTAG 768 0.4922 MEVGLKKEKMVFEETDLRLGLGLGLPGNGATATEAEGVRKRGFSETETETETTTVDLMLNLSPKEGAAATTAAAGADPRDHKPKPSPKEKTLLISDPTKPPAKAQVVGWPPVRSSRKNMFAAQKSNGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0282 255 SUPERFAMILY CAD & PB1 domains 132 236 - -
Apr8g0282 255 MobiDBLite consensus disorder prediction 20 52 - -
Apr8g0282 255 ProSiteProfiles PB1 domain profile. 137 237 IPR000270 GO:0005515
Apr8g0282 255 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 248 IPR003311 GO:0005634|GO:0006355
Apr8g0282 255 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 248 - -
Apr8g0282 255 Pfam AUX/IAA family 21 246 IPR033389 -
Apr8g0282 255 Gene3D - 118 249 - -
Apr8g0282 255 MobiDBLite consensus disorder prediction 64 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0282 Apr-Chr8 2364382 2367219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0282 129 240 B3 DNA Binding Superfamily AT3G61830 33.929 1.01e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr8g0282 AUX_IAA 1.9e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0282 K14484 - gmx:100780214 397.512