Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0281 ATGTCAACAAAAATGGAGAATAATTCCCTGAGCAGCCACGAACAAGAGCTGAATTTGAAGGATACGGAACTAAGGTTGGGTTTGCCCGGAAGTGATGAGCCTGATACACGTTCTGTTATTAGAAGCAACAAGAGATCTTCACCAGAAGCCAGTGATGAGTCCATAAGCAAGAGTCTCATGAATTCTAATGGCTCTGATATCACAAATGATGATGATGATCAAGACAACGTCCCACCCGCAAAGGCACAGGTAGTGGGGTGGCCACCAATTCGATCTTTTAGGAAGAACACTCTGCAAGTACAAGAAAAGAAAGGAGAAGAAGGTGAAGGGAGTGGGATGTATGTGAAAGTGAGCATGGCGGGTGCACCTTACTTGAGGAAGATGGATCTCAAGGTTTACAAGAGCTACCCAGAACTCCTTAAGGCCATGGAAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGAGACGTTCCATGGAACATGTTCGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCCGAAGCAAAGGGGTTGGGTTGTTTTTGA 627 0.4434 MSTKMENNSLSSHEQELNLKDTELRLGLPGSDEPDTRSVIRSNKRSSPEASDESISKSLMNSNGSDITNDDDDQDNVPPAKAQVVGWPPIRSFRKNTLQVQEKKGEEGEGSGMYVKVSMAGAPYLRKMDLKVYKSYPELLKAMENMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLGCF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0281 208 Pfam AUX/IAA family 22 206 IPR033389 -
Apr8g0281 208 MobiDBLite consensus disorder prediction 52 67 - -
Apr8g0281 208 MobiDBLite consensus disorder prediction 37 51 - -
Apr8g0281 208 MobiDBLite consensus disorder prediction 1 15 - -
Apr8g0281 208 ProSiteProfiles PB1 domain profile. 112 199 IPR000270 GO:0005515
Apr8g0281 208 SUPERFAMILY CAD & PB1 domains 107 198 - -
Apr8g0281 208 PANTHER AUXIN-INDUCED PROTEIN 11 206 - -
Apr8g0281 208 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 206 IPR003311 GO:0005634|GO:0006355
Apr8g0281 208 MobiDBLite consensus disorder prediction 16 30 - -
Apr8g0281 208 MobiDBLite consensus disorder prediction 1 82 - -
Apr8g0281 208 Gene3D - 106 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0281 Apr-Chr8 2350266 2351744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0281 115 205 B3 DNA Binding Superfamily AT2G46530 39.560 1.10e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr8g0281 AUX_IAA 3.1e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0281 K14484 - gmx:100780752 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1021 4 8403435 8404834 Apr8g0281 8 2350266 2351744 PCT