LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g0271	ATGAATCGGCTACTACCATCAAGCCTAGTGCCAGATGAAACAAGCCCCGAATGGATGAACAAGGGGGATAACACGTGGCAGCTAACGGCAGCTACTCTTGTTGGGCTCCAAAGTGTTCCGGGTCTTGTTATACTCTACGGTAGCATAGTTAAAAAGAAATGGGCCTTGAACTCGGCATTCATGGCACTGTACGCATTTGCTGCGGTTTTGGTTTGTTGGGTGGGGTGGTGCTACCAAATGTCGTTCGGTGAGAGGATTTTTCCGTTTCTGGGTCGTCCAAACGTGGCCTTGGATCAGAAATTCCTTCTGCGCCAAGCTTTTTCAGGGAACTTTCCCAATGCCACCATGGTTTACTTTCAGTTGGTTTTCGCGGCTATCACGTTGATTCTCATAGCAGGAGCGTTGCTTGGGAGAATGAACCTTCATGCGTGGATGTTGTTTGTTCCTCTCTGGCTCACCTTCTCTTACACCGTTTGTGCCTTCAGTATATGGAGCACTGATGGATGGTTATTCAAGATGGGTCTCATTGATTATTCTGGTGGCTTTGTTGTTCACCTTTCTTCTGGGGTAGCCGGTTTCACCGCAGCATCCTGGGTTGGACCAAGGGCAATGAAGGATAGAGAGAGGTTTCCTCCAAACAACATACTTCTAATGCTGGCTGGGGCTGGCTTACTATGGATGGGATGGACTGGATTCAACGGTGGAGATCCTTACACAGTGAGCATAGATGCATCTCTTGCCGTCCTTAACACCCACGTGTGCACGGCCATGAGCTTGTTGACTTGGCTTCTCCTTGACATCCTCTTCTTTGGAAAGCCTTCTGTGATTGGAGCCACTCAAGGCATGATCACTGGCTTGGTTTGCATCACACCAGCAGCTGGTGTGGTGCAAGGTTGGGCAGCAATGATAATGGGAATGATGTCTGGAAGCATCCCATGGTACACAATGATGGTCCTCCACAAAGAAATTAAGCTCCTAAAACAGGTGGATGATACTATGGCAATATTCCACACCCATGCTGTGGCTGGTTGCTTAGGTGGCATTCTAGCTGGCTTCTTTGCTGACCCTAAGCTTTGCCGTCTCTTCTATCAGGTACAAGATTGGCAACACTATACTGGCCTTGCTTATGGCATATTGACAGGGAGGGCCAAGGCAGGGTTCAAGCAAATGGGGGTTCAGTTCCTTGGCATTGTTTTTGTGATACTTCTCAATGTCACCACTACTACCATTGTGTGTCTCTTGGTTAGGACCATAGTTCCATTGAGGTTATCCGAAGATGACTTGCATGTTGGGGATGATGCTGTGCATGGTGAGGTTGCCTATGCATTGTGGGGCGATGGAGAGAGACTTGAGACTACCAATGTTGACACTACGAATTTTGATGAAAGGAATAATCGTCAATGGCCAACTTTGGAGCTAAAAAATTCGAATGATGTTCAATTGAAATGA	1449	0.4748	MNRLLPSSLVPDETSPEWMNKGDNTWQLTAATLVGLQSVPGLVILYGSIVKKKWALNSAFMALYAFAAVLVCWVGWCYQMSFGERIFPFLGRPNVALDQKFLLRQAFSGNFPNATMVYFQLVFAAITLILIAGALLGRMNLHAWMLFVPLWLTFSYTVCAFSIWSTDGWLFKMGLIDYSGGFVVHLSSGVAGFTAASWVGPRAMKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHVCTAMSLLTWLLLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAMIMGMMSGSIPWYTMMVLHKEIKLLKQVDDTMAIFHTHAVAGCLGGILAGFFADPKLCRLFYQVQDWQHYTGLAYGILTGRAKAGFKQMGVQFLGIVFVILLNVTTTTIVCLLVRTIVPLRLSEDDLHVGDDAVHGEVAYALWGDGERLETTNVDTTNFDERNNRQWPTLELKNSNDVQLK*	483

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g0271	482	PRINTS	Rhesus blood group protein signature	120	136	IPR002229	GO:0005887
	Apr8g0271	482	PRINTS	Rhesus blood group protein signature	216	234	IPR002229	GO:0005887
	Apr8g0271	482	PRINTS	Rhesus blood group protein signature	247	269	IPR002229	GO:0005887
	Apr8g0271	482	PRINTS	Rhesus blood group protein signature	302	320	IPR002229	GO:0005887
	Apr8g0271	482	TIGRFAM	amt: ammonium transporter	23	441	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Apr8g0271	482	PANTHER	AMMONIUM TRANSPORTER MEP2	5	461	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Apr8g0271	482	Pfam	Ammonium Transporter Family	26	441	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Apr8g0271	482	Gene3D	Ammonium transporter AmtB like domains	8	444	IPR029020	-
	Apr8g0271	482	SUPERFAMILY	Ammonium transporter	18	423	-	-
	Apr8g0271	482	PANTHER	AMMONIUM TRANSPORTER 4 MEMBER 1-RELATED	5	461	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g0271	Apr-Chr8	2224159	2226062	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g0271	114	470	Inorganic Solute Cotransporters	AT2G38290	57.703	8.90e-139	402

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g0271	K03320		-	gmx:112999382	800.045

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