Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0263 ATGTTCCCTGCAGTTATGTCCAATTCGAATTCTTTGTCCGAAGAGGCCAGTGTTTCCTCTGGTACAAGAATTGGCGGACTTAATCACGTAGTCACAAACAATATTTATCCACAGCAGCCTCAGAAAATCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACTAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTTCCTTGGAAGTTGAAGCAAAGGAACAGCAAAGAGGTGAAGAAGAGAGCATACGTTTGTCCAGAACCTTCATGTGTTCACCACAACCCCTCAAGGGCTCTAGGGGACCTTACAGGAATTAAGAAACACTACTGCAGAAAGCATGGAGAGAAAAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGACGGCAAACCAAATAGCCACAACCAACACAAACCCATTAGTCCCCTCCCTCTTTCTCTTCCCAACCCAACACAATAACTTCCAAAACCACATCACTCCTTGGGACCCATCTCAACAAAGCCCTAACCCTAGCAACCTTACTTTGCTCCACCCCAACATCAAGCCTGAAGCTCAAAACTTTCACATCCCCAACAACGCCCCATTTCTTCATCAGCACCAAAAGAACATGATAACCTCACCCTTCCGTGATCTCCACGTCCGCACCTCCACCGCTGCCACGTCAGCACACCTCTCGGCCACTGCACTTCTCCAGAAGGCTGCAACCGTCGGTGCCGCTGCCATCACGGGCCCTACTCAGCAGAGTCACGTGACTCACCTCAGCATGTCCGAGTTCGGAACCATGACTCAGCTCGACTCGGTGCCACCCGAACGCTACATGAACATGAGAGGCCTAAATACTACTTCCAACCTTAAAAATAATGACCGTCTCACGAGGGACTTTCTGGGCCTCACCGGCGATACCAACGGCGGCGCGGTTGACGTTAGCATCGACATGAAGGATATGCTAACGTTTACGGGGGGTAGCGTAGAGTACCAACAACAACCTTATGAGCACCATCACAACTCAATTTTCAAGTCCCAACAAGGATTTGGATTCCTTGGTACGACAACTGCCCCCGAATCGTGGGGAAATTGTTAA 1320 0.4811 MFPAVMSNSNSLSEEASVSSGTRIGGLNHVVTNNIYPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLTANQIATTNTNPLVPSLFLFPTQHNNFQNHITPWDPSQQSPNPSNLTLLHPNIKPEAQNFHIPNNAPFLHQHQKNMITSPFRDLHVRTSTAATSAHLSATALLQKAATVGAAAITGPTQQSHVTHLSMSEFGTMTQLDSVPPERYMNMRGLNTTSNLKNNDRLTRDFLGLTGDTNGGAVDVSIDMKDMLTFTGGSVEYQQQPYEHHHNSIFKSQQGFGFLGTTTAPESWGNC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0263 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Apr8g0263 439 MobiDBLite consensus disorder prediction 1 20 - -
Apr8g0263 439 MobiDBLite consensus disorder prediction 35 54 - -
Apr8g0263 439 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Apr8g0263 439 SMART c2h2final6 149 169 IPR013087 -
Apr8g0263 439 SMART c2h2final6 114 144 IPR013087 -
Apr8g0263 439 SMART c2h2final6 73 95 IPR013087 -
Apr8g0263 439 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 418 - -
Apr8g0263 439 Gene3D Classic Zinc Finger 52 121 - -
Apr8g0263 439 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Apr8g0263 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 418 - -
Apr8g0263 439 Gene3D Classic Zinc Finger 142 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0263 Apr-Chr8 2131524 2135258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0263 15 428 IDZ Gene Family AT4G02670 51.044 2.02e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0263 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0263 K25870 - gmx:100780056 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1037 4 8565991 8569992 Apr8g0263 8 2131524 2135258 PCT