Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0262 ATGGATTATACATATCCAGTAGTGAAAGAAGAATACTTAGAACCCTCATCATCATATCAATCAGGTGGTGAATATACACCAATGATTCCCCCTCCACAGCCAATGGAGGGGCTTCATGACACGGGAACCCCTCCATTTCTCACCAAAACTTTTGATGTGGTGGGCGACCCAACAACCAACCATGTAGTTTCTTGGAGCAAAGATGGCACCAGCTTTGTGGTTTGGGACCCACATGCCTTCTCCACTGCTCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGATAGATGGGAGTTTGCAAATGAAGGATTCATGAGAGGGCACAGCCACTTGTTGAGGAATATAAGGAGAAGGAAGGCACCTTCCCAACTAGCACAAGATCAACAGTGTGTCGAAGTTGGACGTTTTAGGGTGGATGAAGAGATCGATCGTTTGAGGCAGGACAAGCGGGTGTTGATGATGGAGCTTGTGAATCTAAGACAGCAGCAACAGAATACCAGAATGTGCATGATGGAGATGGAGCAAAGGTTACAAGGGACAGAAATCAAGCAGCAGCAAATGATGGCATTCTTAGCTAGAGCTATAAAAAATCCAGCCTTTGTACACCAACTGCTACAGCAGAAGGAGAAAAGAAAGGAGCTTGAAGAAGCCTTGACCAAAAAGAGGAGAAGGCAAATTGAGCTAGGAGATTCAACTACTAGAAGTGGGGGTGAAGGAAGGAGCACTGTTAAAGTTGAGCCCGTAGAATTTGGAGTGTCTGAGTTGGAGATGTTAGCTATGGAAATGCAGGGTTTTGGAAAGGAAATGGTTGGCCAAGAGGAAGGAGTTGATAGAGAACTTGATGAAGAGTTCTGGGAAGAACTACTGTTTAGTGAGAAATTTGAGGGTCGATTAGACATTCCAACAGCTGAAGATAAAGATGAAGATGAAGATGTCAACGTGTTGGCCAATCAATTGGGTTGCTTGGATTCAAGTCATTGA 1032 0.438 MDYTYPVVKEEYLEPSSSYQSGGEYTPMIPPPQPMEGLHDTGTPPFLTKTFDVVGDPTTNHVVSWSKDGTSFVVWDPHAFSTALLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFMRGHSHLLRNIRRRKAPSQLAQDQQCVEVGRFRVDEEIDRLRQDKRVLMMELVNLRQQQQNTRMCMMEMEQRLQGTEIKQQQMMAFLARAIKNPAFVHQLLQQKEKRKELEEALTKKRRRQIELGDSTTRSGGEGRSTVKVEPVEFGVSELEMLAMEMQGFGKEMVGQEEGVDRELDEEFWEELLFSEKFEGRLDIPTAEDKDEDEDVNVLANQLGCLDSSH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0262 343 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 15 330 - -
Apr8g0262 343 Gene3D - 38 136 IPR036388 -
Apr8g0262 343 Pfam HSF-type DNA-binding 46 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0262 343 SMART hsfneu3 42 135 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0262 343 PRINTS Heat shock factor (HSF) domain signature 46 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0262 343 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0262 343 PRINTS Heat shock factor (HSF) domain signature 97 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0262 343 SUPERFAMILY "Winged helix" DNA-binding domain 42 135 IPR036390 -
Apr8g0262 343 Coils Coil 221 241 - -
Apr8g0262 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 330 IPR027725 -
Apr8g0262 343 Coils Coil 159 179 - -
Apr8g0262 343 ProSitePatterns HSF-type DNA-binding domain signature. 85 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0262 Apr-Chr8 2118721 2121579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0262 32 342 HSF AT3G22830 50.000 1.61e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr8g0262 HSF_DNA-bind 2.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0262 K09419 - gmx:100811945 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1038 4 8579690 8583436 Apr8g0262 8 2118721 2121579 PCT