Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0256 ATGGAGCAGTATGAAGTTCTCGAACAGATTGGAAGAGGCTCTTTTGCTTCAGCTCTGCTTGTTAGGCACAAGCACGAAAACAAAAGGTATGTTCTTAAGAAGATTCGTCTAGCGCGCCAAACTGATAGAACCCGTAGATCTGCTCACCAGGAGATGGAGCTTGTCTCTAAAGTTCGGAATCCGTTTATTGTTGAGTATAAAGATTCTTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGGCAGAAGTTATTAAAAAGGCTAATGGTGTTCTTTTCCCTGAAGAGAAGCTTTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGACTAGGTGACTTTGGTCTAGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCAGTTGTGGGAACACCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCCTTGGGGTGCTGTGTATATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTTGATATGCAAACACTTATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAACCATCCGCATCTTCAACCTTATATTCTTAGAATTCACTTGAAATTAAATAGCCCCAGAAGAAGTACTTTCCCATTCCAATGGTCTGACTCAAACTATGTAAGGAGGACTCGGTTTTTGGAGCCGGAATCTGTTTCTACTCTTTCTGACAGAGAGAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGCATTTCTGGAACTGAACTAGGTTCTCTGTGTTCTACACTAAGAGCACACAGATTCTCTACTTGTTCAAAAGAGAAACTCTATGAACTATCTGATGGCTGTGTCCGTGAAGAATGCAATCCAAACAAGTCAAGAGACGCAAAGTTCTCAACTGTTGATAGGATTCCAAGATCGAGGGAAGCTAAGGAGTATGTCAACCCCCGACGGCAGACAATACCATCAAAGATATCCCATACTGGTTTCAAGCGTGATTTACTTCCAGCATCTCTCACTCCAGCTGGTAAATTTCCTCCACCAACTCGTAGAGCCTCCCTTCCACTACCTACCAGAGACATGGTCACAACCACCCCTCCTAGAGCTAATGTCAGTCTTCTTCGAAGTGTGGACTCTCCTGATATTTCTGTAAATGCACCACGAATTGACAAGATTGCTGAATTCCCTCTGGCCTCTTCTGAGGATCCTCTCTTCCCTGTCCGTGGAATTTCATCAACATCGGTTCAGTGGTCTTCTGGTTCCCCAAGTAATGCTGACTGCTTAATCACAAAAGACAAGTGTACAATCCAAGTTGTGGACAAAGCCAGTGTCCCTTCCAGTGGCAGTGATGTTTGTCCTGGTGCTCCAGTTTCATTTGGCAATGAATACTCTGAACATGTGGCAACTGCTGTTTCAAGTCTCTCCTCTGGTGAGTCTCGTCAGCACAGATTTGACACCTCTTCTTTCCAGCAACGCGCAGAGGCATTGGAGGGTTTGCTTGAGTTCAGTGCACGGCTCCTACAGCAACAGAGGTTTGAAGAGCTTGGGGTATTATTGAAGCCGTTTGGTCCTGAGAAGGTTTCTCCAAGGGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTGGTCTAA 1845 0.4363 MEQYEVLEQIGRGSFASALLVRHKHENKRYVLKKIRLARQTDRTRRSAHQEMELVSKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEVIKKANGVLFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILRIHLKLNSPRRSTFPFQWSDSNYVRRTRFLEPESVSTLSDREKRLSFSNDRALNPSISGTELGSLCSTLRAHRFSTCSKEKLYELSDGCVREECNPNKSRDAKFSTVDRIPRSREAKEYVNPRRQTIPSKISHTGFKRDLLPASLTPAGKFPPPTRRASLPLPTRDMVTTTPPRANVSLLRSVDSPDISVNAPRIDKIAEFPLASSEDPLFPVRGISSTSVQWSSGSPSNADCLITKDKCTIQVVDKASVPSSGSDVCPGAPVSFGNEYSEHVATAVSSLSSGESRQHRFDTSSFQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVV* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0256 614 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Apr8g0256 614 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Apr8g0256 614 CDD STKc_Nek 3 258 - -
Apr8g0256 614 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0256 614 MobiDBLite consensus disorder prediction 406 434 - -
Apr8g0256 614 SUPERFAMILY Protein kinase-like (PK-like) 1 310 IPR011009 -
Apr8g0256 614 Gene3D Transferase(Phosphotransferase) domain 1 84 270 - -
Apr8g0256 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Apr8g0256 614 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0256 614 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 603 - -
Apr8g0256 614 PANTHER SERINE/THREONINE-KINASE NEK4 1 603 - -
Apr8g0256 614 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0256 Apr-Chr8 2066333 2071463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0256 10 259 MAP Kinase Kinase Kinase AT1G53570 30.196 1.91e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Apr8g0256 Pkinase 2.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0256 K08857 - gmx:100810347 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0256 8 2066333 2071463 Apr8g0256 8 2066333 2071463 ECH
Apr4g1042 4 8618933 8626353 Apr8g0256 8 2066333 2071463 PCT