Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0239 ATGAGGGAGGGGCTGAGATCTCAGACTCGATTGGAGAAGGTTTCTGGGGGTGGTGGAGTTGTCCACAAGGAAGGGGGTGGTGTAAAGAATGAGGCCTTTAATTTGGGTGGTGAGGGTTTAGAGGTGCCGGACTTAACGATTGAGAATAAGGGTGGTGTTGATCGTGCTGTAAAAGTAGAATGTGACTTGGATTTGGATGTGAGTTCCAGTGGTAATGTTGGCTTAGCTGAGAATGACAGCAGTAGTTGTTTTAATGGTGGGGGTAGCATTGTAGTTGCTGATGTTGATAGGAAGGCGAAGAAGGAACACGGATCAAATGATGCAATGTTGATTGGTGGTCGAGTGTTGCGATCGAGGTCAAGGAGGGTGGATGATACAAGATTGTCTAGTGAAGAGAATGGTGAGGTCTTTTCTGGAAATAATAAAGGACATTGTGGGTTTGAGAGGATAAAAGTTAAGAAGGAGTATGAAGAGACTGATGATTTTTTTGCTGACAGTTATGAGAATGAAAGGGTTAAGGTGAAGGAAGGGAATGGCAAGAGGAATTTGAAACGGAAGCGTGGGAGGCCTCCCAAAATGGAGTTGAAAGAGCAAGATCAACTTGCTATTCAGTCTCCACGAAAGCGTGGAAGACCACCCAAGGCTGGCCAACAAAACCATCTTGTGACAGTGGTTGCACATAAAAGAAAAGGAAGGGCAGGCCTTCGGATAGGTAGAAAAGGTTTCACTGTGAGAGATGGTGCTAATGTGAATGCAATTGATGATACATATTCAAGGAAATCTGCTGGGAATGAGTTAGAAAAGAAAGGATTTTCTCCTGTCAAGAAGAATAAAATTAGTAAGGTTTTGAAGACTGAGAACAATGTGGTGGCCTCACCATCAATATCAAGTCCAGTGAATGCTTTTATTGCTGAGAAAAATGGAAAGAATAAAGTAAAACAGTTAGTGAGGGATCAAATAATGGAACGGCTCTCAGCTGCAGGCTGGAAAGTTGACTATAGACCCAGGAATGGCAGAGAGTACAATGATGCAGTGTATGTTAGTCTTGATGGAAGGACACACTGGTCAATCACCTTGGCCTACAATAGGCTTAGAGAGCATTATGAAGCTGGTGATGGTGAAGGTAAGGTATATAGGCCAGGTTTCAAATTTACACCAATACCAGAAGAGGATTTCAAAATACTAACAAAGGTAATTAACAAGCAAAGGAAAAGTAAATGTAAATTGGTAAAAAGGGGGGGAAAGGGTGGTAAGAAAGTTTATGGAGTCAATAGTAAAGAGAATATACAAAAATCAGGTTCTGCTGCAGACATGGGCAAGTCAGGGACGAGGAAAATTAAAAGGAAATGGTCACTTGGCAACACAGATGTTACATCAGCTAACAGGATGCCAGTTCTAGTGAGGGATCATAAGCGATACAAAACACAAAACAAGAAGCAATGTGCTCTGCTGGTTCGCAATGCTGAGGAGGAGATAGATTCCGAAACTGAGGGATATGTACTGTACAGTGGAAAACGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCAAAATGGGAAGGTTCATTATATGCAAAACAAAAGGAACAGTGCAGCACTGGATGGTACAATCACAGGAGATGGCATTCATTGTGGCTGCTGTAATAAAATTGTTACAATTTCAGACTTTGAAGTTCATGCAGGAAGCAAACTCTCTGATCCTCTTAAAAATATATTTATAGAGGAAGGAACTTCCCTTTTACAATGCTTGCTAGATTCATGGAATAAGCAAGATGAATCAGAACGAAAAGGTTTTCATTTTGTTGATGTAGCAGGTCAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGATCTGATATGTTGTGATGGTTGCCCATCAACATTCCATCAAGGTTGCTTGGACATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTTGGTTGGTGGAAGTTCAAACCATAGGGATGGCCATGATGAACTTACCGTGTCAAAATTACTCACCTGCCAGTTATGTGAGGAAAAATATCACAGGTCCTGTATTGAGGCAAATAGTGCAAACACTGATGATTCCAGGGATGTCTTCTGTTGTGGGAATAGCTGTCAAGAGTTATCCAAGAGACTTGAAATGATCATTGGGGTTAAACATGAAATTGAAGATGGGTTTTCTTGGACTTTTATTCGGCGGTCAGATGTAGGCTTTGATGCTTCTCAGATAGAACCTCAGATGGTTGAATGCAATTCCAAACTAGCTGTTGCATTATCAATAATGGATGAGTGCTTTATGCCATATATGGATCATAGAAGTGGGGTTAATCTGATCCACAGTATTCTGTATAATTGTGGGTCAAACTTCAAACGTCTGGATTATAGTGGATTTGTTACGGCAATTCTAGAGAGAGGTGATGAGATCATATCTGCTGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTTATTGGGACACGCTATATGTATAGGCGACAAGGAATGTGCCGGCGGCTTCTAAATGCCATTGAATGGGCACTCAAGTCTTTAAATGTTGAGTTATTGGTCATACCAGCTATCTCAGAACTGAGAGAAACTTGGACTTCTGTTTTTGGGTTTCAGCCACTTGAATTGACTAGCAAGCAAATAGTAAATAAAATGAATCTATTGGTATTCCCTCATGTAGATATGTTACAGAAGAAGATATCAGAACATAAATTTGATGGTGAAAATCTGATTCCCACAGAGGTTTCCAATCTTAAGAATCAAATAGCACATAATTGTGATGGAGCGGGTTCATCTGCATCTGATTTGATCAACTTTACTAAGATTGCTCCCTCTAGTGCATGCCAGATAAATGATGAAACCATATCTACTGAACCTGGTTTTCATCTTCCTGAAGGTTCATTAAATAATGTACCTGGCATTGTTAGCAACACTTCAGATCTTAGGAAATCTGTGAAAGATGACACACGTCAAGTTGTATGTCTGCCTGTTCAAGATAATTTGGTGATGGAACTCAACAGTACTGAAATTACCTGTGATTATGTGACTGATACGTGTTGCCAAACTAAAGATATAACTGCATACAAGAATACAAGTTGTGATTGCATCATGGTGAACCATGATGAGAAGCCTATAGATTTGGATAGCCAACTGAACAATTGTTGTGTTCCTTCTGACGGAAGACCGTGTCTCAATGTGTCTTGTATTAGCACTGAAGCTACTGAAGAAGGACATCGTGTTACCGTTTCACTGAAGGTTACTGAAAACTTTACGAATCAGGTCAAAGTAGCATTTGAGGTTATCTCAAATAACAACAGTGCTGAAAACTCTGCACCTTGTGGTGCTGAAAGCATTCCTCTTGACTCACAAACTGTGTTTAGTACTAGGAACTCAAAAGATTCTGCTGACTGTATTAACCAGCATTCATATAGTATTTCTGACAGTTGTGGACTGACTAACAAGATTGATTGTGTTCAACCAAACTTTATAGGATCAAAAGTACATGATGAATCTGTCGATGTTTGTGGTCGTCATTCTAGACCCAAGGGTGATTGTGCCTCTGGTGAAGCAGTTCCCCCATCCAAAGATTGTCCTGTTAGTTGTGAAAACAAAAATTCTGGAGTTACTTGTTTGACAAATCCTGATGGAGTGAAATTATGTTCTGCCAAATTACACAACCCACAGTCAAACGTAAATCCTGGAGATTGCCATTCCATATCGGTATATTCAGGTATTTGTGAGAAGAATGTAGATGGTGTCAATGAGAGGAGTAAAGCCGAGGCCAATTTCCTTCCTGCTGATACAGAGATAGTTCCCAATATTATGTCTCGGATGAACGGGTCTTCAGAGCTAGCTAAGGCTGATCTGCAGGTTGATCAAACTGCACGGAGCAATGCTCCATCCTTGTGGAGTTCAAACACTGCTTCTAGTGCGGCCCTTCACTGGCCATCTGCTGGCAGTACTTCATGTGGTAATGCTGAGGGGATAGTTTTGTCCAACCAAGCCAGTTGA 4059 0.4104 MREGLRSQTRLEKVSGGGGVVHKEGGGVKNEAFNLGGEGLEVPDLTIENKGGVDRAVKVECDLDLDVSSSGNVGLAENDSSSCFNGGGSIVVADVDRKAKKEHGSNDAMLIGGRVLRSRSRRVDDTRLSSEENGEVFSGNNKGHCGFERIKVKKEYEETDDFFADSYENERVKVKEGNGKRNLKRKRGRPPKMELKEQDQLAIQSPRKRGRPPKAGQQNHLVTVVAHKRKGRAGLRIGRKGFTVRDGANVNAIDDTYSRKSAGNELEKKGFSPVKKNKISKVLKTENNVVASPSISSPVNAFIAEKNGKNKVKQLVRDQIMERLSAAGWKVDYRPRNGREYNDAVYVSLDGRTHWSITLAYNRLREHYEAGDGEGKVYRPGFKFTPIPEEDFKILTKVINKQRKSKCKLVKRGGKGGKKVYGVNSKENIQKSGSAADMGKSGTRKIKRKWSLGNTDVTSANRMPVLVRDHKRYKTQNKKQCALLVRNAEEEIDSETEGYVLYSGKRTLLAWMIDLGTVLQNGKVHYMQNKRNSAALDGTITGDGIHCGCCNKIVTISDFEVHAGSKLSDPLKNIFIEEGTSLLQCLLDSWNKQDESERKGFHFVDVAGQDPNDDTCGVCGDGGDLICCDGCPSTFHQGCLDIKKFPSGDWHCIYCCCKFCGLVGGSSNHRDGHDELTVSKLLTCQLCEEKYHRSCIEANSANTDDSRDVFCCGNSCQELSKRLEMIIGVKHEIEDGFSWTFIRRSDVGFDASQIEPQMVECNSKLAVALSIMDECFMPYMDHRSGVNLIHSILYNCGSNFKRLDYSGFVTAILERGDEIISAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALKSLNVELLVIPAISELRETWTSVFGFQPLELTSKQIVNKMNLLVFPHVDMLQKKISEHKFDGENLIPTEVSNLKNQIAHNCDGAGSSASDLINFTKIAPSSACQINDETISTEPGFHLPEGSLNNVPGIVSNTSDLRKSVKDDTRQVVCLPVQDNLVMELNSTEITCDYVTDTCCQTKDITAYKNTSCDCIMVNHDEKPIDLDSQLNNCCVPSDGRPCLNVSCISTEATEEGHRVTVSLKVTENFTNQVKVAFEVISNNNSAENSAPCGAESIPLDSQTVFSTRNSKDSADCINQHSYSISDSCGLTNKIDCVQPNFIGSKVHDESVDVCGRHSRPKGDCASGEAVPPSKDCPVSCENKNSGVTCLTNPDGVKLCSAKLHNPQSNVNPGDCHSISVYSGICEKNVDGVNERSKAEANFLPADTEIVPNIMSRMNGSSELAKADLQVDQTARSNAPSLWSSNTASSAALHWPSAGSTSCGNAEGIVLSNQAS* 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0239 1352 Pfam AT hook motif 206 216 IPR017956 GO:0003677
Apr8g0239 1352 Pfam AT hook motif 184 194 IPR017956 GO:0003677
Apr8g0239 1352 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 756 916 IPR000182 GO:0016407
Apr8g0239 1352 MobiDBLite consensus disorder prediction 190 204 - -
Apr8g0239 1352 CDD NAT_SF 812 871 - -
Apr8g0239 1352 PANTHER PHD FINGER PROTEIN 12 217 1207 IPR042163 GO:0003714|GO:0045892
Apr8g0239 1352 SMART AT_hook_2 184 196 IPR017956 GO:0003677
Apr8g0239 1352 SMART AT_hook_2 206 218 IPR017956 GO:0003677
Apr8g0239 1352 MobiDBLite consensus disorder prediction 175 218 - -
Apr8g0239 1352 MobiDBLite consensus disorder prediction 1 28 - -
Apr8g0239 1352 ProSiteProfiles Zinc finger PHD-type profile. 613 658 IPR019787 -
Apr8g0239 1352 SMART PHD_3 657 717 IPR001965 -
Apr8g0239 1352 SMART PHD_3 615 656 IPR001965 -
Apr8g0239 1352 SUPERFAMILY FYVE/PHD zinc finger 608 661 IPR011011 -
Apr8g0239 1352 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 803 876 IPR016181 -
Apr8g0239 1352 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 217 1207 - -
Apr8g0239 1352 Pfam Tify domain binding domain 538 587 IPR032308 -
Apr8g0239 1352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 678 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0239 Apr-Chr8 1884727 1893720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0239 182 921 PHD Transcription Factor Family AT5G36670 40.881 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0239 - - gmx:100784172 1513.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0239 8 1884727 1893720 Apr8g0239 8 1884727 1893720 ECH
Apr4g1056 4 8757858 8764721 Apr8g0239 8 1884727 1893720 PCT