Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0224 ATGGCTGCGCCACTAGGGAGTAGGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACATATAGCCTCTTCTGGCAACTTTGTCCACAACAAGTGATTTTGGTTTGGGGTGATGGGTACTACAACGGGGCAATTAAGACTCGGAAGACGGTGCAACCAATGGAGGTTAGTGCTGAAGAGGCGTCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCATTGTCTGCCGGAGATACAAACCCACCAACTCGCCGACCTTGTGCTGCCTTGTCGCCGGAGGACCTAACAGAATCCGAATGGTTCTATTTGATGTGTGTTTCATTCTCCTTTCCTCCTGATGTTGGGTTGCCGGGAAAGGCATATGCAAGGAGGCAGCATGTATGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGAGTGCTCGTATACAGACCGTGGTGTGCATTCCTCTGTTGGACGGCGTCGTTGAGTTCGGAACAACGGAAAAGGTGCAAGAAGACCTCAATTTCATCCAACACGTGAAAAGTTTCTTCTTAGACCATCACCACCCTCTGCCGCCGAAGCCCGCCCTGTCGGAGCACTCAACCTCCAACCCCACCTCCTCCTCCGATCACATCCCCACCGTGATGTACACCGTGGCAGACCCACCCCCCACCCACACAATCAACCAAAACGACATGGATGAAGACGAAGAAGAAGAGGAAGATGAAGCCGAATCTGCCTCCGAAGACGAAACGGGAGGCCATATCGCTGGCCCCGCAACGACGCCCGACACGGCGGCGGAGCCGAGTGAGCTGATGCAGCTGGAGATGCCGGAGGATATCCGGGTCGGGTCACCAAACGACGGGTCCAACAACTTGGACTCGGACTTTCATTTGCTAGCGGTGAGTCAGACCGGAAACCCGTCGGGTCAAGCCGAATCGACCAGGAGGTGGGCCCCGATCCAAGACCCGTTACAAGTTCAACTACCGGTTTCAGCACCTCATCCCTTAGAAGACTTAACACAAGAAGACACTCACTACTCTCAAACGGTATCGAACATCCTCCAAAACCAATTCTCAAGGTGGACCCACTCATCACCCTCCGTTGGCTACATCCCGTACTCCAACCTATCAGCTTTCGCCAAGTGGACAACCCTCGCCGACCACCACTTCCACGCTCCCGTCGACGGTACCAACCAGTGGCTCCTCAAATACATCCTGTTCACAGTACCGTACCTCCACGCCAAAACTCCCGACGACAACTCTCCCCAAAACCGAGACACCGCCGCCGCCGACACTGCCCGGTTACGCGGCAAAGGAACACCGCAAGACGAGCTAAGCGCCAACCATGTCCTGGCGGAGCGCCGCCGCCGGGAAAAACTAAACGAGAGATTCATCATTCTGAGGTCTCTCGTTCCCTTCGTCACCAAAATGGACAAGGCTTCAATATTAGGCGACACCATAGAATACGTTAAACAGTTACGGAGAAAGATTCAAGAGCTAGAAGCGCGTAACCGGCAAATGGAAGCTGATGCAACGGTTCAAAGGACGAGTAGCAGTTCGAGCAAGGAACAACAGAGAAGTGGGATAACGGTGATGGAGAAGAGGAAGGTGAGGATCGTTGAGGGGAATGGTGTGAAAGCGAAGGCTGTGGAGGTTGAAGCTTCCACGTCAGTGCAAGTTTCGATCATAGAGAGCGATGCGTTGTTGGAGCTTGAGTGTCCCCATAGAGAAGGGTTGCTTCTTGATGTGATGCAAATGCTAAGAGAGGTTCGAATAGAGGTGATTGGGGTGCAATCATCGCTTAACAATGGGGTGTTTGTTGCTGAGTTGAGGGCTAAAGTGAAGGAAAATGCGAATGGTAAAAAAGTTAGCATTGTGGAAGTTAAGAGAGCACTTAACCAAATCATCCCTCATAGTGTTGATTAA 1950 0.5205 MAAPLGSRLQSMLQAAVQSVQWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGDTNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPDVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTEKVQEDLNFIQHVKSFFLDHHHPLPPKPALSEHSTSNPTSSSDHIPTVMYTVADPPPTHTINQNDMDEDEEEEEDEAESASEDETGGHIAGPATTPDTAAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQTGNPSGQAESTRRWAPIQDPLQVQLPVSAPHPLEDLTQEDTHYSQTVSNILQNQFSRWTHSSPSVGYIPYSNLSAFAKWTTLADHHFHAPVDGTNQWLLKYILFTVPYLHAKTPDDNSPQNRDTAAADTARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRQMEADATVQRTSSSSSKEQQRSGITVMEKRKVRIVEGNGVKAKAVEVEASTSVQVSIIESDALLELECPHREGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKENANGKKVSIVEVKRALNQIIPHSVD* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0224 649 SMART finulus 458 507 IPR011598 GO:0046983
Apr8g0224 649 PANTHER TRANSCRIPTION FACTOR TT8 8 646 - -
Apr8g0224 649 MobiDBLite consensus disorder prediction 513 536 - -
Apr8g0224 649 MobiDBLite consensus disorder prediction 517 535 - -
Apr8g0224 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Apr8g0224 649 Coils Coil 491 525 - -
Apr8g0224 649 MobiDBLite consensus disorder prediction 198 273 - -
Apr8g0224 649 MobiDBLite consensus disorder prediction 204 221 - -
Apr8g0224 649 MobiDBLite consensus disorder prediction 239 255 - -
Apr8g0224 649 Gene3D - 453 525 IPR036638 GO:0046983
Apr8g0224 649 Pfam Helix-loop-helix DNA-binding domain 455 502 IPR011598 GO:0046983
Apr8g0224 649 MobiDBLite consensus disorder prediction 423 458 - -
Apr8g0224 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Apr8g0224 649 Coils Coil 237 257 - -
Apr8g0224 649 PANTHER TRANSCRIPTION FACTOR TT8 8 646 - -
Apr8g0224 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 454 523 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0224 Apr-Chr8 1759214 1768736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0224 289 649 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.158 1.78e-56 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0224 bHLH-MYC_N 3.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0224 - - gmx:100786815 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0224 8 1759214 1768736 Apr8g0224 8 1759214 1768736 ECH