Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0213 ATGGAAGCTCAAAGCCACCAAGAGAACACTGAGCAACTAGTGCCTTGTGACAGTGGAGGAACCACCAATGATGTCTCTCATTCAGCTGAGGCTCATCCAATTCCAAACCCAAAATTTGTGATTGCAGCATCTGGAAGAAATGGGAGCCAGTGGACTTGCCTCCCAAAACCATCTCATAACTATGTTGAATATCTTTCAGAATCCTCAACTTATATGCCCAACACTTCAACTGAATACATGATTGGGAACAGTTATCTACCTGTTGGCAGCATGAATGATGGTAATGGGATCACGGGGATAGACAGAAACTTCTTTTACAATGACCCAGGAAAAGCTTGTGGCTTTAAGCCTATTGCTTCTTCAAGTAATGACCTTGACATAAGGAAGGTTGGTTTTTGGAGAGTTGATGAAGGAGAGGAAACAATTAAAGTTGAAAGTGGAAGTAGTCAAAATCTTCTTTATGATGAGGGTCATGCTTCATGGACAGCAGATTCAGTTGGAGATAAGCATAATGGTTCACGATTTGATCCAATGGTAATGGTTGGTGCACCTTCTTTCCTTCCCAAACCAGGATGCAGCTCCTCAAAACAGAAAACACGTGTCACTGACCGTCAACGCAGGCAACGCATTGCTGAAAACCTCAAAGCTTTACACGAATTGCTTCCAAATCCAGCTGAGGGTAGTCAAGCGTACATACTGGACGATATTATTGACTATGTCAAATATTTGCAACTTCAAATAAAGGAACAAAGTGGAGGTAGGTTGCAAGCTGAATCAACTGCTATACCACTAGTTTTTCATGAGGGTTATGGCCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGAAAACTACTTGAAGAACATTCAACGGCAGCCAGTCAGCTACTGGAGAGTAAGGGTCTTTTCTTGCTGCCCATGAATTTGGTTGATGACTTGAGTGAAGCAATGGAAATGTTCAACGGAACTACACTTGTCTGA 996 0.4227 MEAQSHQENTEQLVPCDSGGTTNDVSHSAEAHPIPNPKFVIAASGRNGSQWTCLPKPSHNYVEYLSESSTYMPNTSTEYMIGNSYLPVGSMNDGNGITGIDRNFFYNDPGKACGFKPIASSSNDLDIRKVGFWRVDEGEETIKVESGSSQNLLYDEGHASWTADSVGDKHNGSRFDPMVMVGAPSFLPKPGCSSSKQKTRVTDRQRRQRIAENLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGGRLQAESTAIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSTAASQLLESKGLFLLPMNLVDDLSEAMEMFNGTTLV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0213 331 Gene3D - 192 252 IPR036638 GO:0046983
Apr8g0213 331 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 14 315 - -
Apr8g0213 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 256 IPR036638 GO:0046983
Apr8g0213 331 SMART finulus 200 249 IPR011598 GO:0046983
Apr8g0213 331 CDD bHLH_AtbHLH_like 202 249 IPR045239 -
Apr8g0213 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 315 - -
Apr8g0213 331 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983
Apr8g0213 331 MobiDBLite consensus disorder prediction 1 33 - -
Apr8g0213 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Apr8g0213 331 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0213 Apr-Chr8 1709426 1711770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0213 201 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 40.650 8.02e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0213 HLH 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0213 - - gmx:100788949 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0213 8 1709426 1711770 Apr8g0213 8 1709426 1711770 ECH