Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0194 ATGGACTTCGTATTTGAAAGTTTTCAGCACTTGTTGTATTACACCTTTGTGGAGATGATCAGTGTACTTCGCGAAGTTAGACCCTCCCTAACAGTTGGTGAAGCAATGTGGGTTTTGCTGATATGTGACTTGAACCTTCCACTAGCTTGTTCAGGAAAGGATCGTTTGAGCAATGCTGTTGATAAAGAGGGAAGCTCCACTAGTTCTTCCAACCTTCAACCAAAGGCTGAGGATGCTTCATTGTTAATCACTGCAGATAAATCCTCTAGAACTTCAGGGGAGTGTAAACCAGGATCTTGTTCTAAACGACATAGTAGAAAAGAAATAGCAGCACTAAGGCAGAAATTCTTACACATGGAGAAAGCCTGCATGGCTTGTGGAAAAGGGGATCTTAAATCAGCGAAGATTGCAAATGTTAGTAGTGGTTTGATTCTTGAAAAAAGACTCAAGCCACCATCTGAAATTCCTAATCAGCAAATGAAATGTGGCTCCTCAAATGCGATAAGCATAAAAGGATTTAGTACAACAAATATAGTGTATCCTGTTTCAAGCAATGATACTTTTCCTGTAGTGAAAGCAAATACTCCAATAGCTGGCAACATGTCCAAACCAAAATCTGAGCCAAGCTCTTCTAACATTCAAAAGTTTATTGATTATTGTGTTGGTATTCCCTTTGATGAGTCTTTGGGTAAGTATGTCCCGCGAGATGAAAAGGATGAATTAATTTTGAAGTTAATATCTCGAGTGCAAGAATTGCAGGATGATCTTCAAAGTTGGAACAAATGGACAAATCAAAAGGTTATGCAAGTTACTGATAAGCTTAGCAAGCTACAGGTTGAGTTTAAAACTCTGAATAAGGAAAAGCAAGATGTGGAAATGCTTAAAAAAGATAAGAAAATTTTGGAGGAAAATGATATGAAGAGGATCACTAAAATGGAGAGTGCCATGGAAAATACTAAAAAGCAAATAGAGAATGCTACTTCGACTACTCTGGTGCTAAAGGCAGAAAACTCCTTGCTAGAGAAAGAGTTAGATGCTGCTAAATTGTGGGTTGTAAAGTCAACGACAAGCTATGAACAAGCACAAGAGAGAGAGCAGATGGCTCTTAAACAGATCCAGTCATGGGAAAGCCAGATAGGATTGCTTCAAGATGAGCTTGAAAGAGAAAAGAACAAATTCTTCCATTTGCAACAGAAGCTAGACAAAGAGAAAAATCTTCAAGCCAAGGTTGAGGGAAGATTGGCAAAAGCGAGAGCAATGAAAGAAAAGCTCATAGCACAGGCTACATCCATTAAAAAGGATAGAGAACAACTCGAAGCACGTGCAAAATCTGAGGAAGATATGATCAGAAAAAAGGCAGCCAATGATCTACTGAAATATGTGGAAGATATTGCAATGCTAGAGAAAGAGTTGGTTGACTTGAAGCTAAAATTTGATTCTGAAAAAATAGCATCACTTCGTAGGCCTGTTGATGAAAGATATGATAATTCCTCAAGCACTAGAAAGAGTAAACCAAACAAGAAGGGAAACAAACAATCTTATATGTCTCAAATGACAGTGAGTTGCCAAGACAAATTGGAAACTGAAAGCTTGAGGAGGGAGCAAGAGTGTGTCATGTGCCTATCAGAGGAGATGTCAGTTGTTTTCCTGCCATGTGCACATCAGGTTCTGTGTCCAAAATGCAATGAACTCCATGAGAAGCAAGGGATGAAGGAGTGCCCTTCATGTAGGACCCCAATCCAACAAAGGATTCATGCTAGATTTGTTTGGCGTTAG 1776 0.3908 MDFVFESFQHLLYYTFVEMISVLREVRPSLTVGEAMWVLLICDLNLPLACSGKDRLSNAVDKEGSSTSSSNLQPKAEDASLLITADKSSRTSGECKPGSCSKRHSRKEIAALRQKFLHMEKACMACGKGDLKSAKIANVSSGLILEKRLKPPSEIPNQQMKCGSSNAISIKGFSTTNIVYPVSSNDTFPVVKANTPIAGNMSKPKSEPSSSNIQKFIDYCVGIPFDESLGKYVPRDEKDELILKLISRVQELQDDLQSWNKWTNQKVMQVTDKLSKLQVEFKTLNKEKQDVEMLKKDKKILEENDMKRITKMESAMENTKKQIENATSTTLVLKAENSLLEKELDAAKLWVVKSTTSYEQAQEREQMALKQIQSWESQIGLLQDELEREKNKFFHLQQKLDKEKNLQAKVEGRLAKARAMKEKLIAQATSIKKDREQLEARAKSEEDMIRKKAANDLLKYVEDIAMLEKELVDLKLKFDSEKIASLRRPVDERYDNSSSTRKSKPNKKGNKQSYMSQMTVSCQDKLETESLRREQECVMCLSEEMSVVFLPCAHQVLCPKCNELHEKQGMKECPSCRTPIQQRIHARFVWR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0194 591 Pfam Zinc finger, C3HC4 type (RING finger) 534 582 - -
Apr8g0194 591 Coils Coil 358 406 - -
Apr8g0194 591 Coils Coil 421 477 - -
Apr8g0194 591 Coils Coil 267 304 - -
Apr8g0194 591 Coils Coil 309 329 - -
Apr8g0194 591 SUPERFAMILY RING/U-box 526 583 - -
Apr8g0194 591 MobiDBLite consensus disorder prediction 489 515 - -
Apr8g0194 591 PANTHER OS05G0141500 PROTEIN 2 81 IPR046934 -
Apr8g0194 591 PANTHER OS05G0141500 PROTEIN 68 588 IPR046934 -
Apr8g0194 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 68 588 - -
Apr8g0194 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 2 81 - -
Apr8g0194 591 ProSiteProfiles Zinc finger RING-type profile. 537 577 IPR001841 -
Apr8g0194 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 587 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0194 Apr-Chr8 1564850 1567325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0194 527 584 C3H Transcription Factor Family AT1G73950 42.373 3.31e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0194 - - aprc:113870807 1163.29