Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0192 ATGACACCAGTTAACCCTTTTTTCTTCTTCTTTTACAATTTCCTTCTTTTGACTCTTCCCTTCCCTTCCCTCTCCGCTTCTTGCCCCCTCAACTTCACCCTCCTCGCCGCCCTCAGTGGCGGCGCAAAACCCACCTCCTACGACTCCTCCGGGAACACCCGCTGCCAGTTCATAAGCCAGGCCCTTCGTCTCGTTCAGTCAGATTACCTTCGCCGCAGTGATTTCTTCGTCCCTCCTCTCAACTCCTCCGACTCATGCTGGCGTGATTTTCAGTCTTACGTTAACCTCTTCGACCCCACCTTCGATATTCGCTCCTCTTGTGGCTTTCAAACAAATTGGATCTCCCAAGGTTGCTCCAACGTCACCACCAGGCAACAGTTTGAAGCCTCGGTTCCCCAATCAGCGCTTCAGAATATGCAGGCTAAGTGTAACCAATCGCTTGAGAATAACTCACCTTGCGCACTTTGCACCACTACTTTCTCCGCTTTGCCATCTTTGGGAATCTCTATTGGGAACCTCTCTGATTGCACTGGTTACCCTTCTATTTATGCTGCTGCTTTTTCCAACCTGTTTGGTCCAGCTGATCCTGGCACTGCCAGGTGCTTGTTCGCCCTCGATTTTTCCTCTGGGGGTTCCAATTCTGGTAAAAAAAGGGTTGTCATTGTGGTTGTTTGTGTTGTTTGTGTCTTGGCTTTGTTGCTTTTGATTATTGGGTTTTGGGCTTATTGGAAGTTGAATGAGAGGGTGAGTGGGGATAAGGATGTTAATATTGCGGAGATGGGTTTGGTTTCTGGGTTGGGTTCGATGGATCAGAGCACCACTTTAATACGCTTCTCGATTGATGATGTTAAGAAGGCTACCAAGAACTTCTCCAGGGATAACATAATTGGGAGAGGGGGTTATGGGAATGTGTATAAAGGGTTGCTCTCTGATGGGAGTGAGGTTGCGTTGAAGAGGTTCAAGAATTGTTCGGCTGCTGGTGATGCTAGCTTCACTCATGAAGTTGAGGTTATTGCCAGCGTTAGGCATGTGAACCTTGTTGCTTTGAGAGGGTATTGTAGTGCCACTACTCATTTGGAAGGTTACCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGCCTCCATGACCATTTGTTTGGTTCAAATGGGGTGAAACTCGGTTGGCCAATTCGTCAGCAGATTGCACTAGGCACGGCTAGAGGGTTGGCTTATTTGCATTATGGGGCTCAACCTGCTATTATTCATAGGGATATTAAAGCAAGTAACATACTTCTTGATGAAAGTTTTGAAGCAAAGGTAGCTGATTTTGGATTAGCAAAGTTTAACCCCGAGGGAATGACTCATATGAGCACTAGGGTAGCTGGAACCATGGGATATGTTGCTCCTGAGTATGCTTTGTATGGGCAATTGACAGAGAGAAGTGATGTGTTCAGTTTTGGAGTTGTGCTTCTTGAGCTGTTGAGCGGGAGGAAGGCTCTTCAGATGAACAATGATGGCCAACCCTCTGCACTCACTGACTGGGCTTGGTCATTAGTCAGAACGGGTAAAACTTTGGATCTTATTGAAGATGGCATGCCAGAACCAGGTTCACCACAAGTGCTTGAGAAGTATGCTTTAATTGCTGTACTTTGTTCTCACCCACAGTTATATGCTAGGCCTACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCAGTTCCCTCAATACCCGAACGGCCAATCCCTCTTGTTGCTGGGAAGCTTGATATTGAGAGATCTGTGAGCAGTAGTGGCTCAGGTCAGCTCTCTAGTCCAACCGGGTATCAATCATATACTTTAGAAAGTGACCAACATTCTTCTAATTCTAGGGAAGAAAGAAGCTCAGGCTCCAGGATTTTGAGTACAGATTGA 1902 0.4621 MTPVNPFFFFFYNFLLLTLPFPSLSASCPLNFTLLAALSGGAKPTSYDSSGNTRCQFISQALRLVQSDYLRRSDFFVPPLNSSDSCWRDFQSYVNLFDPTFDIRSSCGFQTNWISQGCSNVTTRQQFEASVPQSALQNMQAKCNQSLENNSPCALCTTTFSALPSLGISIGNLSDCTGYPSIYAAAFSNLFGPADPGTARCLFALDFSSGGSNSGKKRVVIVVVCVVCVLALLLLIIGFWAYWKLNERVSGDKDVNIAEMGLVSGLGSMDQSTTLIRFSIDDVKKATKNFSRDNIIGRGGYGNVYKGLLSDGSEVALKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCSATTHLEGYQRIIVCDLMKNGSLHDHLFGSNGVKLGWPIRQQIALGTARGLAYLHYGAQPAIIHRDIKASNILLDESFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKTLDLIEDGMPEPGSPQVLEKYALIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGKLDIERSVSSSGSGQLSSPTGYQSYTLESDQHSSNSREERSSGSRILSTD* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0192 633 SUPERFAMILY Protein kinase-like (PK-like) 272 577 IPR011009 -
Apr8g0192 633 MobiDBLite consensus disorder prediction 589 614 - -
Apr8g0192 633 Pfam Protein kinase domain 291 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0192 633 MobiDBLite consensus disorder prediction 589 633 - -
Apr8g0192 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Apr8g0192 633 PANTHER OS01G0253100 PROTEIN 17 618 IPR045271 GO:0004714|GO:0006468
Apr8g0192 633 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Apr8g0192 633 Pfam SPARK 25 163 IPR043891 -
Apr8g0192 633 ProSiteProfiles Protein kinase domain profile. 290 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0192 633 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 17 618 - -
Apr8g0192 633 SMART serkin_6 290 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0192 633 Gene3D Phosphorylase Kinase; domain 1 264 369 - -
Apr8g0192 633 Gene3D Transferase(Phosphotransferase) domain 1 371 572 - -
Apr8g0192 633 CDD STKc_IRAK 296 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0192 Apr-Chr8 1551422 1554733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0192 8 619 Receptor kinase-like Gene Family AT2G48010 61.514 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Apr8g0192 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0192 - - gmx:100800760 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0192 8 1551422 1554733 Apr8g0192 8 1551422 1554733 ECH
Apr8g0192 8 1551422 1554733 Apr4g1110 4 9371111 9373513 ECH
Apr4g1109 4 9357246 9358916 Apr8g0192 8 1551422 1554733 PCT