Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0179 ATGGCGGAAGGAAAGGAAGAGAGTAAATCTAGCCAGGATAGTGTCAAACTGTTCGTTGGCCAAGTGCCTAAGAACATGACGGAAGATGAAGTGCTCGAAATGTTCAAGGACTTGGCATTGGTTGAGCAGGTCAACATCATCAGAGACAAAGCCACTCGTGCCTCCCGAGGTTGTTGCTTTCTAATCTGTCCCTCCAAGGAAGAGGCGGATAAGGCGGTCAATGCCTGTCACAACAAGAAAACGCTTCCTGGGGCCTCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATATTTCTGAAGTTGAAGTCTCTAATCTTTTCTCAAAGTATGGAACCATAAAGGATTTACAGATTTTAAGAGGTTCTCAACAAACAAGTAAAGGATGTGCTTTTTTGAAGTATGAAACCAAAGAACAGGCCGTTGCTGCTCTTGGGGAAATCAATGGAAAGCATATAATGGAGGGTTCAAGTGTTCCTTTGGTGGTTAAATGGGCGGATACTGAAAAGGAAAGACAAGTTCGAAGGGCTCAGAAAGCAGAATCTCAAGTTTCTACTGTGTCACATGTTGATTGTCAGCATCCCTCATTATTTGGAGCCTTACCAATGGGTTATGTTCCTCCATATAACGGATATGGTTATCAGGCTCCCGGGGGCTATAGGCTCATGCCATACCGCTTTCCACCGATGCAGAATCAACCAGGTTTCCATAATATAATGCCTCACATGAACCAAGGAAATGCATTGAGGCCTGATCTTGGTCACAATATGAATTATCCTGTGCCTTATGCAAGTTACATTGGTTCTTATCCTGCAGTGCCAGGTATACAAATACAGCATCCTATGGCATACCCTGAAGGAATGATAAGTCCGAGGCTTGTGTGTAGTTCTCCTGATTCTATTTCACCTGCAGGCGGGAATAACAACTCAGTTTCATCTTCAGGTGCCAGTAAAAATTCTAGTGGTCAAATTGAAGGACCGTCTGGTGCAAATCTTTTTATTTATCACATACCACAAGAGTATGGAGACCAAGACCTTGCAAATGCTTTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCTACTGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTGCAGAAGCTGCTCAAGCTGCCATTAGTGTGATGAATGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGAGTAAGCTTCACTGA 1293 0.4246 MAEGKEESKSSQDSVKLFVGQVPKNMTEDEVLEMFKDLALVEQVNIIRDKATRASRGCCFLICPSKEEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSNLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQAVAALGEINGKHIMEGSSVPLVVKWADTEKERQVRRAQKAESQVSTVSHVDCQHPSLFGALPMGYVPPYNGYGYQAPGGYRLMPYRFPPMQNQPGFHNIMPHMNQGNALRPDLGHNMNYPVPYASYIGSYPAVPGIQIQHPMAYPEGMISPRLVCSSPDSISPAGGNNNSVSSSGASKNSSGQIEGPSGANLFIYHIPQEYGDQDLANAFQPFGRVLSAKIFVDKATGVSKCFGFVSYDTAEAAQAAISVMNGCQLGGKKLKVQLKRDNKQSKLH* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0179 430 CDD RRM3_CELF1-6 347 419 - -
Apr8g0179 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Apr8g0179 430 PANTHER RNA BINDING PROTEIN 8 417 - -
Apr8g0179 430 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Apr8g0179 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Apr8g0179 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Apr8g0179 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Apr8g0179 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Apr8g0179 430 CDD RRM1_2_CELF1-6_like 16 92 - -
Apr8g0179 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Apr8g0179 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Apr8g0179 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Apr8g0179 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Apr8g0179 430 MobiDBLite consensus disorder prediction 314 339 - -
Apr8g0179 430 Gene3D - 2 99 IPR012677 -
Apr8g0179 430 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 8 417 - -
Apr8g0179 430 Gene3D - 321 429 IPR012677 -
Apr8g0179 430 Gene3D - 100 191 IPR012677 -
Apr8g0179 430 SUPERFAMILY RNA-binding domain, RBD 103 425 IPR035979 GO:0003676
Apr8g0179 430 CDD RRM1_2_CELF1-6_like 104 179 - -
Apr8g0179 430 SMART rrm1_1 346 419 IPR000504 GO:0003723
Apr8g0179 430 SMART rrm1_1 16 92 IPR000504 GO:0003723
Apr8g0179 430 SMART rrm1_1 104 179 IPR000504 GO:0003723
Apr8g0179 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0179 Apr-Chr8 1440124 1443731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0179 345 430 Eukaryotic Initiation Factors Gene Family AT4G34110 30.682 1.53e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0179 K13207 - gmx:100807662 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0179 8 1440124 1443731 Apr8g0179 8 1440124 1443731 ECH
Apr4g0439 4 3721850 3727981 Apr8g0179 8 1440124 1443731 PCT