Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0172 ATGTCGTTTAGGAGCATCATCCTTGAAAGGAAGGGATTTGAGGTTAAATTTGGATATGGCATGAGATCCAGATCACAGTCACATAGTGATGCTATTGGGCAGGGTAGTTTGGTGGTGATTGATGGGTTGAAACAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTTCTCATGAGGATAGAGGCCTCTGAAGATTCCTGGCCTGCCCGGAAACATGTCGTTGCCTGTGCCGGCGTTTGCCGTAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCTCCTCAAGAATCCGGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATTAAACGAAATCGCTGTAATCAAACATATTATCTGTATCTTGGTTTGAACCAAGCCTCAACTGACGATGGAAAGTTCCTTCTTACTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATTTCTCTAAACTACAATGATGTATCAAAAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACTGTGTATGATGCACACCCTCCAATTTATGGAGCAAAAGTTGCAAAGTCTCGTTCCACTAGGCTTGTCAGCCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGAAACTATCCCATTGCTCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGCATCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATAGTTCACCATCCATCCCTTTCTTCAGATCAAAATCAACCCGCATGGAGAATCTCCAAGCAGTACCTTTGACTTGCCAAAATGAGGGAACGCTGGTATTACGAAACAAGTCCCCAAGGTGGCATGGACAACATCAATGCTGGTGTCTGAACTTCAATGGACGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGGGTTTCTGAGCAGGCTCAGGAAAATGTTATCCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCTTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 0.4431 MSFRSIILERKGFEVKFGYGMRSRSQSHSDAIGQGSLVVIDGLKQSCWANMPPELLRDVLMRIEASEDSWPARKHVVACAGVCRSWREIMKEIVKSPQESGKLTFPISLKQPGPRDSLLQCYIKRNRCNQTYYLYLGLNQASTDDGKFLLTARKCRRATHTDYIISLNYNDVSKGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKVAKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDSSPSIPFFRSKSTRMENLQAVPLTCQNEGTLVLRNKSPRWHGQHQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0172 400 Pfam F-box domain 48 94 IPR001810 GO:0005515
Apr8g0172 400 PANTHER TUBBY-RELATED 1 399 - -
Apr8g0172 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Apr8g0172 400 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 399 - -
Apr8g0172 400 Pfam Tub family 109 395 IPR000007 -
Apr8g0172 400 Gene3D Tubby Protein; Chain A 106 400 IPR025659 -
Apr8g0172 400 SUPERFAMILY Tubby C-terminal domain-like 98 400 IPR025659 -
Apr8g0172 400 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Apr8g0172 400 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Apr8g0172 400 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Apr8g0172 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Apr8g0172 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Apr8g0172 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Apr8g0172 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0172 Apr-Chr8 1376662 1380034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0172 1 400 TUB Transcription Factor Family AT2G47900 72.816 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr8g0172 Tub 6.2e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0172 K19600 - gmx:100809257 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0172 8 1376662 1380034 Apr8g0172 8 1376662 1380034 ECH