Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0162 ATGGACTTGTATGGTCGGAGCCCCGCCAGGAATGGATCCAACCCGGTGAATCAACCCGAATGGCGCTCACCGACCACCGACACTGGCCTAGAAGAATCGATGTGGCATTTAACGCTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGCGTGCCTAATTGTGTGTATTACATGCGGACCGGATTCTGTGGATATGGTGCCAGGTGTCGTTACAATCACCCTCCTGATCGTGCTGCGGTTGCTGCAGCGGTAAGGGCAACTGGGGAGTACCCAGAACGATTGGGGGAACCTCCATGTCAGTATTATTTAAAGACTGGAAACTGTAAATTTGGTGCATCCTGTAAATTCGACCATCCAAAAAATGGAGGCGGATATTTAAGCCATGCTCCACTAAATATTTATGGATATCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCGTCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTTTGGCTGAACAGTATGGAGGAGCTTCTACAAACTTGAGAGTGGCTAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGGTGGAGTCATTATTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGCGCTCAACCTGCTGTTGGAGCTACTTCTCTATATGGAGTGACCCAGTTGTCGTCATCAACATCTGCATTTGCTAGACCATATACTCCTCTGCCCTCTTCTACTGGCCCTTCTGGAAGCAGCCTGAAGGAACAATTTTTTCCAGAAAGACCTGGCGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCCCGGGACCAGATTGTGGCACGGCCACTGCTTAGTCCCATTGGTCTTCCTTTACGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACAGTCCATCAGCATCGTCTCTCATTGATGTGCCAGTTACTCCATACCCAGTTGGGTCTTTGCTATCTAGTCTGGCTCCTTTAACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGATCCAAAAAGGAATCTTTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTTTGATTTTCTCACAAGGTGGGTCTATCTCACTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCTAAACAGTAGCAGAAACAGACAAAGTGGTGAAGCACGTTGA 1413 0.4784 MDLYGRSPARNGSNPVNQPEWRSPTTDTGLEESMWHLTLGGGESYPERPGVPNCVYYMRTGFCGYGARCRYNHPPDRAAVAAAVRATGEYPERLGEPPCQYYLKTGNCKFGASCKFDHPKNGGGYLSHAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPSSAPQFYQQVQSPTVPLAEQYGGASTNLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWSHYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSTGPSGSSLKEQFFPERPGEPECQYYLRTGDCKFGLACRYHHPRDQIVARPLLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSSLAPLTTSSELRPELMSGSKKESFSARIPSSGNSSGTSVGLIFSQGGSISLSDVQLSSQSSAPLNSSRNRQSGEAR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0162 470 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Apr8g0162 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Apr8g0162 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 120 IPR000571 GO:0046872
Apr8g0162 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Apr8g0162 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Apr8g0162 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Apr8g0162 470 Gene3D - 127 173 - -
Apr8g0162 470 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Apr8g0162 470 MobiDBLite consensus disorder prediction 448 470 - -
Apr8g0162 470 MobiDBLite consensus disorder prediction 417 433 - -
Apr8g0162 470 MobiDBLite consensus disorder prediction 10 28 - -
Apr8g0162 470 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Apr8g0162 470 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Apr8g0162 470 MobiDBLite consensus disorder prediction 1 28 - -
Apr8g0162 470 Gene3D - 43 124 - -
Apr8g0162 470 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Apr8g0162 470 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Apr8g0162 470 PANTHER PROTEIN PHOSPHATASE RELATED 17 454 - -
Apr8g0162 470 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Apr8g0162 470 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Apr8g0162 470 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Apr8g0162 470 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Apr8g0162 470 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Apr8g0162 470 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 454 - -
Apr8g0162 470 SUPERFAMILY CCCH zinc finger 52 76 IPR036855 GO:0046872
Apr8g0162 470 MobiDBLite consensus disorder prediction 407 433 - -
Apr8g0162 470 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Apr8g0162 470 Gene3D - 295 377 - -
Apr8g0162 470 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Apr8g0162 470 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0162 Apr-Chr8 1235078 1239365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0162 20 435 C2H2 Transcription Factor Family AT5G18550 52.055 3.56e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g0162 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0162 - - gmx:100812475 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0162 8 1235078 1239365 Apr8g0162 8 1235078 1239365 ECH