Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0161 ATGGACTTGTACGGTCGGAGCCCCGCCAGGAATGGAACCAACCCGGTGAATCAACCGGAATGGCACTCGCCGACCACCGACACTGGACTCGATGAATCGATGTGGCATTTAACGCTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGCGTGCCTAATTGTGTTTATTACATGCGGACCGGGTTCTGTGGATATGGTGCCAGGTGTCGTTACAGTCACCCTCCTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGAGTACCCAGAACGGGTAGGGGAACCTCCGTGTCAGTATTATTTAAAGACTGGAACTTGTAAATTTGGGGCATCCTGTAAATTTCACCATCCGAAAAGTGAAGGTGGATATTTAAGCCAAGCGCCACTAAATATTTATGGATACCCGTTACGCCCTGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGGCTGAACAGTATGGAGGAGCTTCTACAAACATGAGAGTGGGTAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCGGGGGTTGTTCCATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCGCTTCTGTATATGGAGTGACCCAGTTATCATCATCAACATCTGCTTTTGCTAGACCATATACTCTGCTGCCCTCTTCTACTGGCCCTTCAGGAAGCAACTTGAAAGAACAATTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATATTATTTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTTGCGATCATATTGTGTCACAGCCACTTCTCAGCCCCGTTGGTCTTCCTTTACGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACAGTCCATCGGCATCGTCTCTCATTGATGTGCCAGTTACTCCGTACCCAGTTGGGTCTTTGCTGTCTAGTCTTGCCCCTTTAACAACATCTTCGGAGCATCGGCCTGAACTGATGTCAGGATTCAAAAAGGAATCCTTTTCAACCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTCGGTTTGATTTTCTCACAAGGTGGGTCTATCCCGCCATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCTAAGCAGTAGTAGAAGCAGCAGACAAAGCGGTGATATACGTTGA 1416 0.4781 MDLYGRSPARNGTNPVNQPEWHSPTTDTGLDESMWHLTLGGGESYPERPGVPNCVYYMRTGFCGYGARCRYSHPPDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKSEGGYLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLAEQYGGASTNMRVGRPPILPGSYVQGAYGPVLLSPGVVPFPGWSHYSAPVSPVLSPGAQPAVGAASVYGVTQLSSSTSAFARPYTLLPSSTGPSGSNLKEQLFPERPGEPECQYYLRTGDCKFGLACRYHHPCDHIVSQPLLSPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSSLAPLTTSSEHRPELMSGFKKESFSTRIPSSGNSSGTSVGLIFSQGGSIPPSDVQLSSQSSAPLSSSRSSRQSGDIR* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0161 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Apr8g0161 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Apr8g0161 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Apr8g0161 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Apr8g0161 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 322 IPR000571 GO:0046872
Apr8g0161 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Apr8g0161 471 PANTHER PROTEIN PHOSPHATASE RELATED 17 455 - -
Apr8g0161 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Apr8g0161 471 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 455 - -
Apr8g0161 471 SUPERFAMILY CCCH zinc finger 52 76 IPR036855 GO:0046872
Apr8g0161 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Apr8g0161 471 MobiDBLite consensus disorder prediction 10 28 - -
Apr8g0161 471 Gene3D - 127 173 - -
Apr8g0161 471 MobiDBLite consensus disorder prediction 413 471 - -
Apr8g0161 471 MobiDBLite consensus disorder prediction 1 28 - -
Apr8g0161 471 SUPERFAMILY CCCH zinc finger 96 122 IPR036855 GO:0046872
Apr8g0161 471 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Apr8g0161 471 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Apr8g0161 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Apr8g0161 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Apr8g0161 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Apr8g0161 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Apr8g0161 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Apr8g0161 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Apr8g0161 471 Gene3D - 47 124 - -
Apr8g0161 471 Gene3D - 294 378 - -
Apr8g0161 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Apr8g0161 471 MobiDBLite consensus disorder prediction 417 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0161 Apr-Chr8 1227553 1231316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0161 20 435 C2H2 Transcription Factor Family AT5G18550 51.147 3.40e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g0161 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0161 - - gmx:100812475 851.277