Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0159 ATGTCAAATATTTCAGGTGATGAAGGGAGTTTCTCCTCAGCAAACACTGATGAAGAAGTTCATCAAGAAAACGAGCAGCAACAACAGCAAAATCACCCTCATGGCTCAAGCGTTGGTGTTTGCAACAGCAATAGTTCTACTAGTCTACAACAACAACAAGCAACCAAGAAGAAAAGAAACCTACCTGGAACTCCAGATCCAAATGCTGAAGTAATTGCTTTGTCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGGGGTCACAATCTTCCATGGAAACTGAGGCAGCGAGCAAGCAGTGAAGTCAAGAAACGAGTGTATGTGTGTCCTGAGCCATCATGCGTTCACCACAATCCAGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAACATTACAGCCGAAAACATGGTGAGAAGAAATGGAAATGCGACAAATGCTCAAAAAAATATGCAGTCCAATCTGATTGGAAGGCCCACCAAAAAACTTGTGGTACCAGGGAATACAAATGTGATTGTGGCACCATATTTTCCAGGAGAGACAGCTTTATCACCCACAGAGCTTTTTGTGACGCATTAACTGAAGAAAACAACCGAGTGAGCCAAGGATTAACGAGTGGCATGACACCAAACATGCAAAACGAATTGCCAGACCTTATGGCTACAATGCCACCAAGCACTAGTACCAACACTGCATCTGAATTCAACAACAACTATGACCCTAAGAACACACTCAAACCCCTCTCACAAGAACTTATCCCAATGCCATTCAAGCCAATGAGCATGGGTGGGGGCATGTTCTCCACCACTTCTGGTACACTTTTTGGTGGTCCAAAAAACATGCCTCCCTCTTCTTCAAGCCTTCAACTCAGCTCCAACAACTCACCTGCTTTCAATTACTTCCAAGATAGCAAAGACGGTACTGCCTCAGCTCACATGTCTGCAACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCTCCCATGATGCAGAAAAGCTTTGTTTGTAGCATGACTGGCCCTGACCATGTCTCTTCTCCTAGACCACTATATTCTGCTGCCATGCACCACAACAATTCTTCCTATGACCATTTCCATACACAGCCTGATCAATCTCACATGGCTGGTGTTTGTGGAGGTGGAGCCTTCACCAACCAAAATTTTCACAAAGGGCAACAAGATATGTCTCTAATATTTGATTCCAACACTACAATGAATGATATGGGAATGTTCAGCACAATGTTCATCGGAAGTGAACACAACCCGGGTTTGATGAAGAATGTTGAACAAGAGGTTGGTAGTGGTAGTACTAGTTTGATTCACAGAAGAAATGTGGCAGAAGGAAACCAAACGGGGGCATCAAGGTTTGGAGGTAGTGACACGACAACGGTTCATGACTTTTTGGGTATTGGAGGTTCAACTTCAAGGGCAGTGAGTTTGCATGAACCACAGAAACAGCAGCAACAAAGATTGGAGTTGGAAGCATTAACCCACCAGAGAATGCAAATTATGAATCACTTTCACCACCACCTTCCACATGGGGATTCAGCTATGGAGAAATCCATTTGGGATATTTGA 1659 0.44 MSNISGDEGSFSSANTDEEVHQENEQQQQQNHPHGSSVGVCNSNSSTSLQQQQATKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASSEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVSQGLTSGMTPNMQNELPDLMATMPPSTSTNTASEFNNNYDPKNTLKPLSQELIPMPFKPMSMGGGMFSTTSGTLFGGPKNMPPSSSSLQLSSNNSPAFNYFQDSKDGTASAHMSATALLQKAAQMGATASNSINSPMMQKSFVCSMTGPDHVSSPRPLYSAAMHHNNSSYDHFHTQPDQSHMAGVCGGGAFTNQNFHKGQQDMSLIFDSNTTMNDMGMFSTMFIGSEHNPGLMKNVEQEVGSGSTSLIHRRNVAEGNQTGASRFGGSDTTTVHDFLGIGGSTSRAVSLHEPQKQQQQRLELEALTHQRMQIMNHFHHHLPHGDSAMEKSIWDI* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0159 552 Gene3D Classic Zinc Finger 63 130 - -
Apr8g0159 552 Gene3D Classic Zinc Finger 140 219 - -
Apr8g0159 552 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Apr8g0159 552 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 534 - -
Apr8g0159 552 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Apr8g0159 552 SMART c2h2final6 126 156 IPR013087 -
Apr8g0159 552 SMART c2h2final6 85 107 IPR013087 -
Apr8g0159 552 SMART c2h2final6 161 181 IPR013087 -
Apr8g0159 552 MobiDBLite consensus disorder prediction 26 59 - -
Apr8g0159 552 MobiDBLite consensus disorder prediction 1 69 - -
Apr8g0159 552 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 534 - -
Apr8g0159 552 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Apr8g0159 552 MobiDBLite consensus disorder prediction 1 17 - -
Apr8g0159 552 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0159 Apr-Chr8 1214750 1217715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0159 56 349 IDZ Gene Family AT3G50700 56.782 5.50e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0159 zf-C2H2 0.0057 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0159 - - gmx:100779705 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0159 8 1214750 1217715 Apr8g0159 8 1214750 1217715 ECH