Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0158 ATGAGTGAGAATATGGGGAAAGTCTCAGAGAGAGAAGGCTTTAAGTACAATTTCACAGCTGCGACTACAAGTGACAGTTCTGCGCAAGATGGAGTGATTAAAGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGAGGATCATGAAGCAAATCCTCCCTCCAAACGCTAAAATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTGTCTGAGTTCATTAGCTTTGTCACCGGTGAAGCCTCTGACAAGTGTCACAAGGAGAAGCGCAAGACAGTGAATGGAGATGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCTCTTAAAAGGTATTTGCATAAGTATAGGGAATTGGAAGGGGAGAGAGCCAATCAAAATAAAGCTAACAACACTTATCAAACCATATAA 429 0.4312 MSENMGKVSEREGFKYNFTAATTSDSSAQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGERANQNKANNTYQTI* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0158 142 SUPERFAMILY Histone-fold 36 137 IPR009072 GO:0046982
Apr8g0158 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr8g0158 142 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr8g0158 142 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 17 138 - -
Apr8g0158 142 Coils Coil 115 135 - -
Apr8g0158 142 Gene3D Histone, subunit A 27 141 IPR009072 GO:0046982
Apr8g0158 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Apr8g0158 142 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Apr8g0158 142 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Apr8g0158 142 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0158 Apr-Chr8 1204130 1204558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0158 16 133 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.939 3.27e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr8g0158 CBFD_NFYB_HMF 7.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0158 K08065 - gmx:100817274 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0158 8 1204130 1204558 Apr8g0158 8 1204130 1204558 ECH