Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0144 ATGAAGTTCTGCAAGACTTACCAACAGTACATGCAAGAGCAGGGGCGAAAGCTCCCTGCTGTTGGCTTCAAGAACCATAAAAAGATCATGAAAAAATGCAGAAGAGGCTCCCAACCCCTTACTCAATCCTTCGCCATCAAAACCTGCCCTGATCATTGCCAAGTGTGCGATGGAACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTAGGGTGCTTCAATCAGCGCGCGCAGAAATTGCTGAAACTACATCTTGCTTCTGGTTTTCGAAAGTACTTTCTCAAGTTGAAAGGAAAATTACCAAAGAATCATACTGCTCTAACCCAAGAAGGCAGAGATCTAGTCATATATGCATTGATAAATACCATAGCAATTCGAAAAATACTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCCAAAGTTCAGACTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTGCTGAGCTTATTGCCTTACACATCAACCTAAGGGAAACTAAAGTCAAAACAAGGAAGGCACCTGCATTGTTCGATGGATGTTATCTCACATTTAAGGATGCAAAACCATCGCTTACTTGTGAGATATTCGATTCTGTCGAAATTGATATTGACTTGACTTGCTCTCTATGTCTGGATACAGTATTTGACCCAGTTTCTCTGACTTGCGGCCACATATTCTGCTATACCTGCGCTTGCTCAGCAGCATCAGTAACTATTGTCGATGGACTTAAGGCTGCGGATCCTAAAGCAAAATGCCCTCTATGCCGACAGGGAAAAGTTTATAAAGATGCTGTGCACCTGGAAGAGTTAAACATTCTTTTAGGCCGAAGCTGCAAGGCGTACTGGGATCAAAGGCTTCAGATGGAGAGGGTAGAAAGGGTTAAACAAGTGAAGGAATATTGGGAAACGCAATGTAGGGCGTTCGTGGGCATCTGA 966 0.4244 MKFCKTYQQYMQEQGRKLPAVGFKNHKKIMKKCRRGSQPLTQSFAIKTCPDHCQVCDGTFFPSLLNEMSDIVGCFNQRAQKLLKLHLASGFRKYFLKLKGKLPKNHTALTQEGRDLVIYALINTIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLAELIALHINLRETKVKTRKAPALFDGCYLTFKDAKPSLTCEIFDSVEIDIDLTCSLCLDTVFDPVSLTCGHIFCYTCACSAASVTIVDGLKAADPKAKCPLCRQGKVYKDAVHLEELNILLGRSCKAYWDQRLQMERVERVKQVKEYWETQCRAFVGI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0144 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 318 IPR013083 -
Apr8g0144 321 ProSiteProfiles SPX domain profile. 1 148 IPR004331 -
Apr8g0144 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 321 - -
Apr8g0144 321 Pfam Zinc finger, C3HC4 type (RING finger) 214 267 - -
Apr8g0144 321 SUPERFAMILY RING/U-box 210 269 - -
Apr8g0144 321 CDD SPX_BAH1-like 2 144 - -
Apr8g0144 321 ProSiteProfiles Zinc finger RING-type profile. 217 266 IPR001841 -
Apr8g0144 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 321 IPR033326 -
Apr8g0144 321 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Apr8g0144 321 SMART ring_2 217 265 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0144 Apr-Chr8 1079572 1082187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0144 209 290 C3H Transcription Factor Family AT4G28270 35.632 1.08e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0144 K16275 - gmx:100803060 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0144 8 1079572 1082187 Apr8g0144 8 1079572 1082187 ECH