Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0118 ATGGATCCACAAACTCAAGAAAAGTACGCTAACAATGGCAAGGTCATTCTTGGCTCAGCCATCCTTCTCTTCCTAATAGTAATAATAATCATTTTCATTCACACCTTCCGCCACTCATGCTTCCGTCGCCGCCGCCATCACCATCACGGTGTTCGAACTGATTCCTCCGTCGCGTTTAAAGAGGCTCTTCAACGAAACCTTCTCAACTCCCTCCCCACCTTCACTTACTCCTCCGACATCCACCGTTCTCTCAATGACTGCGCTGTTTGCTTGACGGAGTTTGTTAACGGCGAACAAGGCCGTATTCTTCCGAATTGTAACCACGCTTTCCACACCCATTGCATCGACACATGGTTCCACTCTCACTCTAACTGTCCACTTTGCCGAACTCTGGTTCACCCACGCGCCGAACCGGTCCAACCTTATCGGGTTGAACCGGGTCCGGTGGGTTTTTATTCTTTTCCTGCACCGATTGGGTGCCCGAGGAAGTCCTTGGAGATGGGAGAAGTAATAGTGGAGCTGGAAGTTGGGAGGCTCAGAGACTCGGATTCGGATTCAGGTCATCGACCCGTTTGA 576 0.5069 MDPQTQEKYANNGKVILGSAILLFLIVIIIIFIHTFRHSCFRRRRHHHHGVRTDSSVAFKEALQRNLLNSLPTFTYSSDIHRSLNDCAVCLTEFVNGEQGRILPNCNHAFHTHCIDTWFHSHSNCPLCRTLVHPRAEPVQPYRVEPGPVGFYSFPAPIGCPRKSLEMGEVIVELEVGRLRDSDSDSGHRPV* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0118 191 Pfam Ring finger domain 85 129 IPR001841 -
Apr8g0118 191 SMART ring_2 87 128 IPR001841 -
Apr8g0118 191 CDD RING-H2_PA-TM-RING 86 129 - -
Apr8g0118 191 SUPERFAMILY RING/U-box 66 135 - -
Apr8g0118 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 134 IPR013083 -
Apr8g0118 191 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Apr8g0118 191 PANTHER RING-H2 FINGER PROTEIN ATL64 6 141 - -
Apr8g0118 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0118 Apr-Chr8 933662 934237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0118 6 136 Rapid Response to Elicitors AT3G16720 40.541 1.64e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0118 - - gmx:102669188 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0118 8 933662 934237 Apr8g0118 8 933662 934237 ECH