Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0117 ATGGCCTACAACTTACGTAATTCCCTCCCAACAATATCAACCTTTCTCATTCTTCTCATACACTCATTCACCTCTCTAACTATCGCAGACATCGCTCCCACTACTTCCACCTCTTCAGGAACCATATGCAATTACACCCCAGACCCATCTTACTGCAACTCTGTTCTTCCTCACCATAACGGAAATGTTTACGATTATGGCCGTTTCTCCGTTAAACAATCATTGTCACAAGCCACCAATTTTTTGAACTTAGTTAACAAATATCTTCAAACCCGTTCCACTCTTTCCCCGGCCGTAATCCTCGCCCTCGAAGATTGCCAAACCCTTGCCGAACTCAACTTAGATTTCCTTTCAACTTCCTTCCTAACAGTGAACAAAGCAACTAGTTTCCTACACACTTCACAAGCTGAAGACATTCAAACCCTCCTTAGTGCCATTCTAACCAACCAACAGACCTGCTTGGAAGGTCTTCAAGCCACTGCTTCATCATGGAGCGTCAAAAACGGACTCTCCATTCCACTCTCTAACGACACTAAACTCTACAGCGTCTCTTTAGCACTCTTTACAAAAGGGTGGGTTCCCAACAACAAAACCACCGTCAACACTCAGCCAAGTGCCAAACAACTCGGGTTTCGAAACGGGCGTTTGCCGCTTAAGATGTCACGCAAGACTCGCACGATCTACGAGTCGGTGAGTCGGAGAAAGCTCCTTCAGGATAAAGTGGGTGACGAGGTTGTGGTGAAGGACATCGTGACGGTGAAGAAAGATGGAAGTGGAAACTTCACCACCATCAACGACGCCATCGCTGCAGCGCCGAACAAGTCTTTGTCGTCGGGTGGGTACTTCTTGATCTATGTGAGTGCAGGTGTTTATGAGGAAACCGTGTCCATTGATAAGAAAAAGACGTACTTGATGATGGTTGGAGATGGCATCAACAAGACAATTATTACAGGGAGTCGCAGTGTTTCTGATGGCTGGACAACTTTCAAGTCAGCAACCTTCGCGGTGGTTGGCGCTGGATTCGTGGGTGTCAACATGACCATCCGTAACACAGCGGGACCCTCGAAGCACCAAGCAGTAGCACTTCGAAACGGGGCAGATTTATCCACATTTTACAGCTGCAGCTTCGAGGGGTACCAAGACACGCTCTACGCCCATTCTCTGCGACAATTCTACAGAGAATGTGACATCTACGGCACTGTAGATTTCATATTTGGAAACGCTGCTGCAGTGTTCCAAAACTGCAACCTCTATCCTCGCCTTCCAATGAGTGGCCAATTCAACGCCATCACCGCACAAGGCCGAACCGATCCGAACCAAAACACCGGCACTTCCATCCACAACTGTACTATTAGAGCTGCCGGTGATTTGGCCGCAAGCATTGGGTCGGCTTCAACTTATCTGGGAAGGCCTTGGAAAAACTACTCTAGAACCGTTTATATGCAAAACTTTATGGACAGTTTCATTGATGCTGCTGGGTGGCGTGAATGGGACGGTGATTTTGCTTTGAACACTTTGTACTATGCAGAGTTTGATAACTGGGGACCTGGTTCTAACACCACTGAGAGAGTGACGTGGCCCGGTTACCACCTCATTAATGCCACTGATGCCGCTAATTTTACTGTCTCTAACTTCTTGCTTGGAAATGATTGGTTGCCACAAACTGGAGTGGCTTACGCCGGTAACTTGATATAG 1695 0.4737 MAYNLRNSLPTISTFLILLIHSFTSLTIADIAPTTSTSSGTICNYTPDPSYCNSVLPHHNGNVYDYGRFSVKQSLSQATNFLNLVNKYLQTRSTLSPAVILALEDCQTLAELNLDFLSTSFLTVNKATSFLHTSQAEDIQTLLSAILTNQQTCLEGLQATASSWSVKNGLSIPLSNDTKLYSVSLALFTKGWVPNNKTTVNTQPSAKQLGFRNGRLPLKMSRKTRTIYESVSRRKLLQDKVGDEVVVKDIVTVKKDGSGNFTTINDAIAAAPNKSLSSGGYFLIYVSAGVYEETVSIDKKKTYLMMVGDGINKTIITGSRSVSDGWTTFKSATFAVVGAGFVGVNMTIRNTAGPSKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAAGDLAASIGSASTYLGRPWKNYSRTVYMQNFMDSFIDAAGWREWDGDFALNTLYYAEFDNWGPGSNTTERVTWPGYHLINATDAANFTVSNFLLGNDWLPQTGVAYAGNLI* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0117 564 PANTHER PECTINESTERASE 29 562 - -
Apr8g0117 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 188 IPR006501 GO:0004857
Apr8g0117 564 CDD PMEI-like_3 41 192 - -
Apr8g0117 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Apr8g0117 564 SMART PMEI_2 34 187 IPR006501 GO:0004857
Apr8g0117 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 29 562 - -
Apr8g0117 564 Pfam Pectinesterase 251 548 IPR000070 GO:0030599|GO:0042545
Apr8g0117 564 Gene3D - 249 564 IPR012334 -
Apr8g0117 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 190 IPR035513 -
Apr8g0117 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 190 IPR035513 -
Apr8g0117 564 Pfam Plant invertase/pectin methylesterase inhibitor 41 187 IPR006501 GO:0004857
Apr8g0117 564 SUPERFAMILY Pectin lyase-like 247 560 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0117 Apr-Chr8 929897 932631 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0117 13 564 Carbohydrate Esterase AT1G02810 61.179 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0117 K01051 - gmx:100790729 895.96