Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0116 ATGCTTATTGGAGATGGAATCAATCAGACAATTATTACTGGCAATCACAGTGTTGGAGATAATTTTACAACGTTCGACTCGGCAACATTTGCTGTGGTAGCTCAAGGGTTCGTAGCAGTTAACATAACATTCCGAAACACTGCCGGACCAGGCAAGTTCCAAGCAGTTGCTGTAAGAAATGGAGCGGATATGTCCACCTTCTACAGTTGCAGTTTTGAAGGGTATCAAGACACATTGTATACCCATTCACTGAGGCAGTTTTACAGAGAATGCGATATCTACGGCACAATTGACTACATATTTGGTAATGCTGCTGTTGTTTTTCAAAACTGCAACCTCTATTCACGGCTCCCCCTAAAGGGACAATTCAATACAATCACAGCTCAAGGAAGAACAGATCCAAATCAAAACACGGGCACTTCCATACAGAATGCCACTATTAAAGCTGCTGCTGATTTGGCTCCAAATATTAGTACTGTCAACACCTACCTTGGAAGACCATGGAAGAATTATTCATTGACAGTGTTTATGGAGTCCTTCATGGATAGTTTAATAAACCCTGCTGGTTGGCATGAATGGAATGGTACTTTTGCGTTGAGCACCTTGTACTATGCAGAATTTAATAACACTGGACCTGGTTCTAACACTACCAACCGAGTGAATTGGCCTGGTTATCACATTATAAATGCCACTGATGCGGCCAATTTCACGGTGTCAAACTTCTTGAGCGGAGATAATTGGATTCCTCAAACTGGTGTCCCATACTCGAGTGGGTTGAATTAA 783 0.4202 MLIGDGINQTIITGNHSVGDNFTTFDSATFAVVAQGFVAVNITFRNTAGPGKFQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDYIFGNAAVVFQNCNLYSRLPLKGQFNTITAQGRTDPNQNTGTSIQNATIKAAADLAPNISTVNTYLGRPWKNYSLTVFMESFMDSLINPAGWHEWNGTFALSTLYYAEFNNTGPGSNTTNRVNWPGYHIINATDAANFTVSNFLSGDNWIPQTGVPYSSGLN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0116 260 PANTHER PECTINESTERASE 1 259 - -
Apr8g0116 260 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Apr8g0116 260 Gene3D - 1 260 IPR012334 -
Apr8g0116 260 Pfam Pectinesterase 1 245 IPR000070 GO:0030599|GO:0042545
Apr8g0116 260 PANTHER PECTINESTERASE 1 259 - -
Apr8g0116 260 SUPERFAMILY Pectin lyase-like 1 258 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0116 Apr-Chr8 920916 923212 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0116 1 259 Carbohydrate Esterase AT1G02810 74.903 1.07e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0116 K01051 - aprc:113870980 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0116 8 920916 923212 Apr8g0116 8 920916 923212 ECH