Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0108 ATGTGTGGCGGTGCTATCATCGCTGACTTCATACCCCGCCGAGGAGCTCGCCGCCTCACGGCCTCCGAGCTCTGGCCTAACTCATTCGCCACCGACTTAGATTATTCTCATAAACAGTCCTCCACCCTCAAAAGATCACACCCTTTCAAAGTTAATGAGCAAGTGGAGAAGCCGGTGAAAAGGCAGCGGAAGAATCTCTACAGAGGGATTCGGCAGCGTCCTTGGGGAAAATGGGCTGCGGAGATTCGCGATCCTAGAAAAGGAGTTCGTGTCTGGTTGGGGACCTTCAACACTGCAGAAGAAGCTGCTAGAGCTTATGACCAAGAGGCTCGAAAAATCCGCGGCAAGAAAGCCAAGGTGAATTTCCCCAACGAAGACGACGAGTATTCCATTCAAGCTCGTGCTACCAATAATCAACACCTTCCTTTCCGACCCCAACCCCAGAACCCTCCTCTGTATCAACAGCAATACCCTTGCAATGTCAATAATGCCCCTACAAACCTCAACTTTGAGTTTGGTTATGATCTCAACCAAACTGGGCCTTTTCCTTCCCCCGTGGAAGCTGTCAACACTGACTCCTTTGTTGTTTCTGGCGATGAAAATTCCGATTATGGAACTGGGTCAGGGTTAGGGTCTGGTTCGGAGGGTGCCTATTCGACGACGGAGTTCATGGGAACAAGTCAGAATGGGAACGGTTTTTTGGGAGGTGCGGTGGAGGCAAATGAGAAAAAGCCACAAGTGATTGAAGCTCAAGATGGTAAGAACACAGTGCAGGAGCTATCCGAGGAATTGATGGCGTACGAAAATTACATGAAGTTTTATCAGATTCCGTACTACGACGGACAATCGACGCCGCCGAATAATGTTCAGGAAAGCGTGGTCGGGGATCTCTGGAGCTTCGATTAA 906 0.4978 MCGGAIIADFIPRRGARRLTASELWPNSFATDLDYSHKQSSTLKRSHPFKVNEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDQEARKIRGKKAKVNFPNEDDEYSIQARATNNQHLPFRPQPQNPPLYQQQYPCNVNNAPTNLNFEFGYDLNQTGPFPSPVEAVNTDSFVVSGDENSDYGTGSGLGSGSEGAYSTTEFMGTSQNGNGFLGGAVEANEKKPQVIEAQDGKNTVQELSEELMAYENYMKFYQIPYYDGQSTPPNNVQESVVGDLWSFD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0108 301 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Apr8g0108 301 Pfam AP2 domain 67 115 IPR001471 GO:0003700|GO:0006355
Apr8g0108 301 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Apr8g0108 301 PANTHER EREBP TRANSCRIPTION FACTOR 38 279 - -
Apr8g0108 301 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700|GO:0006355
Apr8g0108 301 CDD AP2 67 124 IPR001471 GO:0003700|GO:0006355
Apr8g0108 301 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Apr8g0108 301 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Apr8g0108 301 PANTHER DNA-BINDING DOMAIN 38 279 IPR044808 GO:0003700|GO:0009873
Apr8g0108 301 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0108 Apr-Chr8 878889 880418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0108 1 124 AP2-EREBP Transcription Factor Family AT3G16770 55.882 4.22e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g0108 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0108 K09286 - gmx:100780763 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0108 8 878889 880418 Apr8g0108 8 878889 880418 ECH