Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0107 ATGGTGTCGTTGAAGCTACAGAAGCGGTTGGCCGCCAGCGTTCTCAAGTGCGGCAGGGGAAAGGTTTGGCTTGATCCCAACGAAGTCAATGAAATCTCCATGGCCAATTCTCGACAAAACATAAGGAAGTTGGTAAAGGATGGGTTTATTATCAGGAAACCAACTAAGATTCACTCTCGCTCTCGTGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGTCGCCACTCAGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCTACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTTAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCACGACATGTATATGAAGGTGAAAGGTAATGTTTTCAAGAACAAGAGAGTGCTTATGGAGAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCAAAGCGTGCAAAGAACAAGGCTAGCAGGGAGAGGAAAATTGCTCGGAGAGAGGAGCGCTTGGCTCATGGTCCGGGAGAGAAGCCATCAGCAGCACCAAGTGCAACAGCATCTCAGCCAGCTCAAGCACCAAAGAAATCCAAGAAGTGA 630 0.4889 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAHGPGEKPSAAPSATASQPAQAPKKSKK* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0107 209 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Apr8g0107 209 MobiDBLite consensus disorder prediction 149 185 - -
Apr8g0107 209 PANTHER 60S RIBOSOMAL PROTEIN L19 1 209 IPR039547 GO:0003723|GO:0003735|GO:0022625
Apr8g0107 209 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Apr8g0107 209 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Apr8g0107 209 MobiDBLite consensus disorder prediction 192 209 - -
Apr8g0107 209 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Apr8g0107 209 MobiDBLite consensus disorder prediction 57 79 - -
Apr8g0107 209 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Apr8g0107 209 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Apr8g0107 209 PANTHER RIBOSOMAL PROTEIN L19 1 209 - -
Apr8g0107 209 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Apr8g0107 209 Gene3D - 57 188 - -
Apr8g0107 209 MobiDBLite consensus disorder prediction 149 209 - -
Apr8g0107 209 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0107 Apr-Chr8 875776 877502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0107 1 209 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.689 2.79e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0107 K02885 - gmx:100527501 379.793