Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0106 ATGGTTTCGGTGAAACTTCAGAAGCGGCTTGGCGCTAGCGTGCTCAAGTGTGGCATAGGCAAGGTTTGGCTTGACCCTAATGAGATCAATGAAATCTGCATGGCCAATTCTCGCCAAAACATACGAAAGTTGGTTAAAGATGGCTTCATCATTAGGAAGCCAACTAAGATTCACTCTCGCTCCCATGCTAGGCGAATGAAGGAGGCAAAGATGAAGGGACGCCACTCTGGATATGGTAAGCGGAAGGGTACAAGGGAGGCAAGGTTCCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTGAGAAGATTGCTTCGCAAGTACAGGGAAGCAAAGAAGATTGATAAGCATATGTACCATGATATGTACATGAAGGTAAAGGGTAATGTGTTCAAGAACAAGAGAGTCTTGATTGAGAGCATACACAAGTCGAAGACTGAAAAAGTTAGAGAGAGGATTTTATTTGACCAATTTGAGGCAAAGCGGGCAAAGAACAAGGCAATTAGGGAGAACAAAATTGCTTGGACAAAAGAGGGTTTGGCAAATGTGGTCTAA 558 0.4462 MVSVKLQKRLGASVLKCGIGKVWLDPNEINEICMANSRQNIRKLVKDGFIIRKPTKIHSRSHARRMKEAKMKGRHSGYGKRKGTREARFPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLIESIHKSKTEKVRERILFDQFEAKRAKNKAIRENKIAWTKEGLANVV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0106 185 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Apr8g0106 185 MobiDBLite consensus disorder prediction 59 83 - -
Apr8g0106 185 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Apr8g0106 185 Gene3D - 57 184 - -
Apr8g0106 185 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Apr8g0106 185 MobiDBLite consensus disorder prediction 59 79 - -
Apr8g0106 185 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Apr8g0106 185 PANTHER 60S RIBOSOMAL PROTEIN L19 1 183 IPR039547 GO:0003723|GO:0003735|GO:0022625
Apr8g0106 185 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Apr8g0106 185 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Apr8g0106 185 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Apr8g0106 185 PANTHER RIBOSOMAL PROTEIN L19 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0106 Apr-Chr8 872508 873567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0106 1 183 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 80.874 7.74e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0106 K02885 - cit:102616399 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0106 8 872508 873567 Apr8g0106 8 872508 873567 ECH