Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0101 ATGTCCTCCGATTCCCATGTCCCTAAGGGCATCCTCTGCAATGCTGGCGCTGGTGCTGCCGCTGGAGTTATTGCTGCTACGTTTGTGTGTCCTTTAGATGTAATCAAAACTAGGTTTCAGGTCAATTCCGTGCCTCAGGTCGCAAATGGAAGTGTTAAAGGCAGTCTTATAATTGGTAGCTTGGAGCAAATATTTCACAAGGAGGGATGGCGTGGCATGTACCGTGGGCTAGGCCCAACTGTGCTTGCCTTGCTTCCGAACTGGGCGGTCTATTTTACAATGTATGAACAGCTCAAGAGCCTACTTTGTTCTGAAGATGAAAGCCATCATCTTTCCATTGGAGCTAATGTGGCAGCTGCTTCAGGTGCAGGAGCTGCAACTACCATTGCTACATATCCACTTTGGGTTGTCAAGACTAGACTCCAAACCCAGGTAAGCAGACCTGGTGTTGTGCCATATAGGAGCACGCTATCAGCTTTAAAGAGAATTGCTCATGAGGAGGGCTTTCGGGGGTTGTACAGTGGCCTTGTACCTGCTCTGGTTGGTATCAGTCATGTTGCCATCCAGTTTCCAATATATGAGAAAATAAAGTTGTATTTGGCAAATAAAGATAACACAGCAATGGATAAGCTCAGTGCACGTGATGTTGCAATTGCCTCATCAGTCTCCAAAATTTTTGCATCTACATTGACATATCCTCATGAGGTTATTCGTTCGAGACTGCAAGTACAGGGGCACCATTCAGTGAAGCAATACTCTGGTATGACCGACTGCATTAGAAAGGTATTTCAACAAGAAGGACTTCATGGTTTTTACCGTGGGTGTGCCACCAACCTACTTAGGACAACCCCAGCTGCCGTAATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCTCTTTTTCCTGCTGACCCACAGTTACAAATTTTATGA 942 0.4544 MSSDSHVPKGILCNAGAGAAAGVIAATFVCPLDVIKTRFQVNSVPQVANGSVKGSLIIGSLEQIFHKEGWRGMYRGLGPTVLALLPNWAVYFTMYEQLKSLLCSEDESHHLSIGANVAAASGAGAATTIATYPLWVVKTRLQTQVSRPGVVPYRSTLSALKRIAHEEGFRGLYSGLVPALVGISHVAIQFPIYEKIKLYLANKDNTAMDKLSARDVAIASSVSKIFASTLTYPHEVIRSRLQVQGHHSVKQYSGMTDCIRKVFQQEGLHGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPADPQLQIL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0101 313 Gene3D Mitochondrial carrier domain 107 302 IPR023395 -
Apr8g0101 313 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 2 311 - -
Apr8g0101 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 299 IPR018108 -
Apr8g0101 313 Pfam Mitochondrial carrier protein 111 203 IPR018108 -
Apr8g0101 313 Pfam Mitochondrial carrier protein 216 301 IPR018108 -
Apr8g0101 313 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
Apr8g0101 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 199 IPR018108 -
Apr8g0101 313 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 2 311 IPR044712 GO:0006862|GO:0055085
Apr8g0101 313 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Apr8g0101 313 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Apr8g0101 313 PRINTS Mitochondrial carrier protein signature 76 96 IPR002067 GO:0055085
Apr8g0101 313 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085
Apr8g0101 313 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085
Apr8g0101 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 101 IPR018108 -
Apr8g0101 313 Gene3D Mitochondrial carrier domain 1 106 IPR023395 -
Apr8g0101 313 SUPERFAMILY Mitochondrial carrier 11 295 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0101 Apr-Chr8 828323 833772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0101 1 307 Chloroplast and Mitochondria Gene Families AT2G47490 74.110 1.76e-158 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0101 K15115 - jre:108994143 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0101 8 828323 833772 Apr8g0101 8 828323 833772 ECH