Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0097 ATGGCAAAAGCAAATGCTAAGAACAAATCCCCCTCCACCGCGCTCCACCCTCCTTACTTCGAGATGATCGCAGATGCAATAGCAACGTTGAAAGACCGCACGGGTTCGAGCCAACCAGCAATAGCCAAGTTCATCGAGGAGAAGCACAATAAAGTGCTTCCTCCCAACTTCAGGAAACTGCTCTCGCTTCAGTTGAAGAAATTCGTCAAATCAGAAAAGCTCTACAAGGTCAAAAACTCCTACAAGCTTTCTTCTTCACTGGAACACCAAACTCAGAAGACCAAAACCACGCCTAAGCAAAAGGGTGGCGAGAAGATTGCGGAGAAGACCAAGAGGCTGAGTCAGGTGAAGACACCGGAAGCTCTCAAGAAGAAAACCACCAACAACAGCAACAAAAAGAAAAAGGAAGTAACTAAGAAGAAAACATCCTCAGGAGGAAAAGTAAAGCGTTTGAGTCAAGTGAAGACTCCTGAAGCTTTGAAGAAGAAGAAGCCCAATTTGACCCCTACGAAACGCAAGAGTACTCCTAAACCCAATAACTCTTCCAGGCCCATTAGGAAAGCTAGGAAATGA 573 0.4555 MAKANAKNKSPSTALHPPYFEMIADAIATLKDRTGSSQPAIAKFIEEKHNKVLPPNFRKLLSLQLKKFVKSEKLYKVKNSYKLSSSLEHQTQKTKTTPKQKGGEKIAEKTKRLSQVKTPEALKKKTTNNSNKKKKEVTKKKTSSGGKVKRLSQVKTPEALKKKKPNLTPTKRKSTPKPNNSSRPIRKARK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0097 190 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0097 190 PANTHER HISTONE H1 4 187 - -
Apr8g0097 190 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0097 190 Gene3D - 11 114 IPR036388 -
Apr8g0097 190 PANTHER HISTONE H1 4 187 - -
Apr8g0097 190 SUPERFAMILY "Winged helix" DNA-binding domain 14 93 IPR036390 -
Apr8g0097 190 MobiDBLite consensus disorder prediction 94 119 - -
Apr8g0097 190 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0097 190 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0097 190 PRINTS Histone H5 signature 140 157 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0097 190 PRINTS Histone H5 signature 162 181 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g0097 190 MobiDBLite consensus disorder prediction 128 146 - -
Apr8g0097 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g0097 190 MobiDBLite consensus disorder prediction 80 190 - -
Apr8g0097 190 CDD H15 16 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0097 Apr-Chr8 784214 785282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0097 17 83 Single Myb Histone (SMH) Gene Family AT1G72740 40.299 7.17e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0097 K11275 - gmx:100306187 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0097 8 784214 785282 Apr8g0097 8 784214 785282 ECH