Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0088 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAGGGGAGATGGACAGCAGAGGAAGATGAGATCTTGGCCAAATATATTGAGGCCAATGGGGAAGGTTCATGGAGGTCATTGCCCAAGAATGCAGGATTATTAAGGTGCGGGAAAAGTTGCAGACTAAGATGGATTAACTACTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCTGAAGAGGAACACACCATCGTAAAGTTGCACGCTTCTTTTGGCAACAGGTGGTCATTGATAGCAAGTCACTTGCCAGGAAGAACCGACAATGAGATAAAAAACTACTGGAACTCTCACCTCAGCAGGAGAATTTACAGTTTCCCCAATACCCAACCAGATTCTGGGGTCATGCTCCCCACACCCAAACGTAAAGGTGGTAGAACCAGTCGTTGGGCCATGAAGAAGAACAAAAGCAACCCTCAAAAGGGTACCCAAAGACCTAAACAAAGTGTCACCCAACAGAATATCGAAAGTGAAGTTCCACCGCCATCCACACCATCACTAGAGAGAGAGGGTTTAATGGAAATGGAAGATGTTGGTGAGGAAATACGGGAAGAGGTGGAGGTACATGGAACATACGAGAAGTACCTTAACGGTGTGAAAGAAAGCGGCGATGATGACGTTTTAGGACTGTGCCAATTGGAAGGCATTAATGGTGTTAGTGGGGAGTTGAGTTTTAGTGACATATTGGACAGTTGTGTTGAGGAAGAAACGTGTGGGGTTTTGACTTTAAGTGAAGAGAGAGAATGCAATGACGTGGTGGGTGTTGGTGTGGAAAATGAAAGACACAATGATGATGATGCGTGTCACAACAAAATGGCTTCGAGTGAGAGTAGTGCGAATCTTAGTTGCAATGGGGATATTGGAGAATGGAATTCTTCCTCTTCTGTGACTTTGGGTTTGGAGGATCGATGGGATTGGGAAAGCGTCATAGAGTTTAATAATATTGAGTCCCATATCGCTTATGATTGGGAGCAAAAAGAAAACTTGCTGACTTGGCTGTGGGAAGACGATGATTGGGAAAGCGATGGAAAAAATTTGGGAGAGACAGATCCTCAGATACAAAACGACGTGGTTGCTTGGTTTCTCTCTTGA 1131 0.4465 MGRAPCCEKVGLKKGRWTAEEDEILAKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEEHTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRRIYSFPNTQPDSGVMLPTPKRKGGRTSRWAMKKNKSNPQKGTQRPKQSVTQQNIESEVPPPSTPSLEREGLMEMEDVGEEIREEVEVHGTYEKYLNGVKESGDDDVLGLCQLEGINGVSGELSFSDILDSCVEEETCGVLTLSEERECNDVVGVGVENERHNDDDACHNKMASSESSANLSCNGDIGEWNSSSSVTLGLEDRWDWESVIEFNNIESHIAYDWEQKENLLTWLWEDDDWESDGKNLGETDPQIQNDVVAWFLS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0088 376 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 353 - -
Apr8g0088 376 MobiDBLite consensus disorder prediction 120 183 - -
Apr8g0088 376 CDD SANT 16 61 IPR001005 -
Apr8g0088 376 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr8g0088 376 Gene3D - 11 67 - -
Apr8g0088 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr8g0088 376 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr8g0088 376 PANTHER MYB TRANSCRIPTION FACTOR 2 353 - -
Apr8g0088 376 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr8g0088 376 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr8g0088 376 CDD SANT 71 112 IPR001005 -
Apr8g0088 376 SMART sant 66 114 IPR001005 -
Apr8g0088 376 SMART sant 13 63 IPR001005 -
Apr8g0088 376 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr8g0088 376 MobiDBLite consensus disorder prediction 144 174 - -
Apr8g0088 376 Gene3D - 71 116 - -
Apr8g0088 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0088 Apr-Chr8 724853 729278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0088 1 376 MYB Transcription Factor Family AT2G47460 40.441 3.41e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g0088 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0088 K09422 - gmx:100814275 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0088 8 724853 729278 Apr8g0088 8 724853 729278 ECH
Apr4g0526 4 4364880 4367690 Apr8g0088 8 724853 729278 PCT