Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0087 ATGGCTCATCCAAGAGTCAACCTCTTCTTCCTCCTATGCCTTATTATTTGCTATTCTCTCTACGCCATTGCGGGAAAGAGCTATTACGACGTACTTCAAGTCCCGAAAAGCGCTTCGGACGAGCAGATAAAGAGGGCGTATAGGAAACTCGCGTTGAAGTACCATCCCGATAAGAACCCTGGCAATCAAGAAGCTAATAAGAGATTTGCGGAAATTAACAATGCGTATGAAGTTCTCTCCGATAGCGAGAAGAGAAGCATTTACGATAAGTATGGGGAAGAAGGTTTGAAACAGCATGCTGCTGGAGGAGGCGGTGGAATGGGAATGAACTTCCAAGATATTTTCAGTTCTTTCTTCGGGGGAGGTCCAGTGGAAGAGGAAGAGAGAATTGTGAAAGGTGATGACGTGGTTGTTGAATTGGATGCGACACTGGAAGATTTGTACATGGGAGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTTTTAAAGCCCGCACCTGGAAAGAGACGCTGTAACTGTAGAAATGAGGTTTATCACAAGCAAATAGGTCCCGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCCAATGTTAAGTATGAAAGAGATGGTTATTTCATCACTGTTGATATTGAGAAAGGCATGGAAGATGGACAGGAAGTGCGATTTTATGAGGATGGTGAGCCCATAATTGATGGAGAGTCCGGAGATCTAAGGTTTCGTATCCGTACAGCACCACATGAGCTCTTCAGAAGGGAAGGCAATGACTTGCACACCACTGTCACTATAACTCTGGTTCAAGCACTTGTTGGCTTTGAAAAGACTATTAAACACCTAGATGAGCATCTGGTGGACATAAGCTCGAAGGGAATCACAAACCCAAAGCAAGTGAGGAAGTTCAAAAGCGAGGGCATGCTACTGCATATGAGCACAAAGAAAGGAGATCTTTATGTCACATTTGAGGTTCTATTCCCCACCTCACTAACGGAGGAGCAGAAAACGAATATAAAAGCCATTCTTGATTAG 1035 0.4425 MAHPRVNLFFLLCLIICYSLYAIAGKSYYDVLQVPKSASDEQIKRAYRKLALKYHPDKNPGNQEANKRFAEINNAYEVLSDSEKRSIYDKYGEEGLKQHAAGGGGGMGMNFQDIFSSFFGGGPVEEEERIVKGDDVVVELDATLEDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYERDGYFITVDIEKGMEDGQEVRFYEDGEPIIDGESGDLRFRIRTAPHELFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGITNPKQVRKFKSEGMLLHMSTKKGDLYVTFEVLFPTSLTEEQKTNIKAILD* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0087 344 CDD DnaJ 28 81 IPR001623 -
Apr8g0087 344 SMART dnaj_3 26 84 IPR001623 -
Apr8g0087 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 131 256 IPR008971 GO:0006457|GO:0051082
Apr8g0087 344 Gene3D - 128 249 - -
Apr8g0087 344 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Apr8g0087 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 253 337 IPR008971 GO:0006457|GO:0051082
Apr8g0087 344 Pfam DnaJ C terminal domain 137 328 IPR002939 -
Apr8g0087 344 PRINTS DnaJ domain signature 29 47 IPR001623 -
Apr8g0087 344 PRINTS DnaJ domain signature 47 62 IPR001623 -
Apr8g0087 344 PRINTS DnaJ domain signature 64 84 IPR001623 -
Apr8g0087 344 PRINTS DnaJ domain signature 84 103 IPR001623 -
Apr8g0087 344 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Apr8g0087 344 Pfam DnaJ domain 28 89 IPR001623 -
Apr8g0087 344 PANTHER BNAC06G43160D PROTEIN 16 343 - -
Apr8g0087 344 SUPERFAMILY Chaperone J-domain 24 122 IPR036869 -
Apr8g0087 344 CDD DnaJ_C 134 331 - -
Apr8g0087 344 Gene3D - 250 328 - -
Apr8g0087 344 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 16 343 IPR044713 GO:0006457|GO:0030544
Apr8g0087 344 Gene3D DnaJ domain 24 127 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0087 Apr-Chr8 716451 721122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0087 26 91 C2H2 Transcription Factor Family AT1G74250 40.845 2.97e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0087 K09517 - gmx:100799151 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0087 8 716451 721122 Apr8g0087 8 716451 721122 ECH