Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0083 ATGTTGGAAACGAGTTATTCTTCGCGAGTTTTTCGCGGTGTTCGTTTCGTTCTCTTTGGCTTTAATCCTGCCACTGAAACCAAGATCCGGTTTAAGCTTGTGAATGGCGGTGGAGTTGATGTAGGGCAGTACGGTGGGAGTTGCACGCATGTTATTGTTGATAAGATTGTAAATGATGATCCTGTGTGTGTTTCTGCTAGAAATGATGGGAAGACACTCGTCACTGCATTGTGGGTTGATCATAGTGCCGATATTGGAATGCCCGTTGATGCTGCCTCGGTTATGTACAGACCTCTTAAAGATTTAAATGGAATACCGGGTGCAAAAAATTTGATAGTGTGCTTGACCGGGTATCTTCGCCAGGATAGGGATGACATTATGACAATGGTCGGTCTGATGGGTGCAGAGTTTTCGAAGCCTTTGGTGGCAAACAAGGTTACTCACCTCATATGCTATAAATTTGAAGGTGAGAAGTATGAGCTTGCCAAGAGATTGGGCACAATAAAGCTAGTCAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGATGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGACGGGGGAGGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCCAAGCTTGGGCAATCAGGGGGAAGAAGTGGAAACCAAAATCCCCTTAGTTTGAAATGTGGTATAGCTACAACCCATGGATTGTCAAGATCAGCACGAGAAGCATCAACTGCCTTCCCAGATTCTACGGGTCCACAGGATTTGCCAGAAGTCAAGCATGGCGAAGACTCTCTAACCATTCCAGGAAATAAGAATGGATCTGATCAAGACTTGAGCTTTCATAATGTTGATGATGCAAAGATAAACAGTCATGTTCCTAATGTTTCTAGGCATTCTAGTTCATGTCAGTTACCTGACACATATGTTAAGACCAGTGAATCCAAGAATGCTGATTTTCCCAAGGAACTTGGCTGCCAGGATCTTGGCATTACTAGAAATGCAAATTCATCCGAGCAGCAACATGATCTGCCTGACAATTCTTTGGAGTCTAAGCAGTTGGCAAGTGACTTGCGGTCAACTTCGGCAAGTGCTTCAGGAGTAGCAAATTCAAATGAAAAGCCTAGAGCTATGTGTTATCCTAGAAAGAACCAAAGGGAATTTACTCTTCCAAGAATCTTAGATGAATGCTCAGGCAGAGGAGGCAACAACAGTGTAAACTCTTCTAGTAAGGTAGAAAAGGCTAGCAAGGGAATAAAATCTAGAGCAGAAAATTCTGGGAATGGAAATGATTTTTTTAAAGGAGATGATCCGTTTAGTTTATTGCCTCAGAAGAGGACAAATAAAGCTTCTTCTTCTACTAAGTTAAAATCAAGGAAGATGACTGCTAATGCAAGATTGTCCATTGAAAGAGTTTCATCAGCAAATGCTAAATCTCAGGGATTAAATGTGACACCACAGGCTGATGACCCACCGGAAGCTGACGATTATTTTCCCGTTGAAGAAGATTGTATTAATAACTCAAACACGTGCTTAATTTCCAAACCTGCAGCTTTTACCTCCAACTCACCGGCATTTGACGAGCCATTCTCAAGAAATGCTAGCTCAGAATCTGCTCAGCGTGATAATGTCTATCAGACTTCACCACAAATAGCTATTCAGAGTTTAAGTGAGTCTAAAACTAACGGCAAGCTTGATATCACGGGTTCTGCAATGCAAAAGATTGATGATAATGAAGCAGAGCAACACAATGTCGCTAGAAATCTCGATTGTTCATCACCAGGAAACAAGTCACAGAATGAGGAATCTGCTAGCCATACTAATTTGAATTTAGGCAAAGGTGTTAAACTAATTAGAAAACCGCCTCGAAAGAAGTCAGTTTGCAAGAAAATTTTGGGTTCTAAACCTAGAGCAGGTGCCACTGTTGGACCAAAAATATCAGTTTCCTTGAATAAAACTATCCCGCTAGTTGAAGCCGTTAGTTTTTCCAGTGGAAGCAAAGAGATTGCAACTTGTGATGCCACGAAGAATCAAGGTTCTCCCCAAATCCTTGGGGTTAATAAAACAACAGAGCAAGAAAAAGTTAGTAAATATGCAGAAGATGCTGGCGGCAGTACTGACATTTTGGATGATGAAACCGAAGCTCCTGATGACAAATGTGAATATGAGTTAGGAATGGCCTTTGATGAGGATTCAATTCCTCTTTCGAAAAAAAGAAACACAGCAACAGAAGAGGGGTCAAAAGTTATTTGCCATGTGACAAAATGCGAAGAAGCAATGCCTTTTCAGAAAGGCACAAATAAAACTGAAAAACAGAAGCTACCTTCAGTTGTAGACTCATCCTCAAAATTAATACTAAAGCATCAAGCAAAAAAACGTCCTGCTGGTAGAGGCAAGACGACCACAGTTTCCAAGGAATTATCGAAGTCTGAGGAGGCAGTATCTGGGGAGAATATTCCTAATGAGACGGTACATAAGCCAGAAATAGAAATCGTGGTAGAAATGTCCCTTCCTGCTGATAAAAATGACACCTCAGCTGTACCAAAAAATAAGTCGAAGAATTTTATTGAAGAGGAGAAGGAGAATAGACCAATTGATGGAGAGCAAGATATATGGCAGGGCAGAAGTGAGGGCAATCGAACTATTAAATCTAGTGTAAAGCCTGGTAAGATCAACTCTAGCAAATTGGGGCTGAATCCATCTAGATCAGAATCGAATGCAAGAGCAAAAACTGAAGCCGTATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACATGTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCGACTCACTTCATATCCCCAGACCCTATACGTAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTCAAAACTGATTTCTTAACTGCTAGTAGCGAGGCAGGGAAGTTCCTTTCAGAGGAGCCTTATGAGTGGCACAAGAATGGCCTCAGTGAGGATGGCGCAATCAATATGGAGGCTCCAAGAAAATGGCGGCTGTTGAAAGAAAGAACAGGTCATGGCACCTTCTATGGAATGCGCATCATAATATATGGCGATTGCATTGCCCCGCCTTTGGATACTCTGAAACGCGCGATCAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACCCGTTTCTTTGGTACCGAAATTGACTATGCTATAGTTAGCCCTGGTATGCCACGTGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTTTGGCGGACTACTTGGTCGAGTATGTTTGCAAGCCAGGGTTCTCCCTTGAGAGACATGTATTATATGGCACTCATGCTTGGGCAGAGAGGTCATACGCAAAACTTCAAAGTAGGGCAGAAGAGATTATTGAAGAGTTCGCTGCTCCTGAGGATTCTAATGATGATGATATACTTTGTCAAGTATGTGGATCTCGGGATAGAGGTGATGTAATGCTAATTTGTGGTGATGAAAGTGGTTCCATCGGCTGTGGGGTCGGTACCCATATTGATTGCTGCGATCCTTCACTCACACATATTCCTGAGGAGGATTGGTTTTGTCCAAAATGTTGTAGCTCGCGAAACTGCTCCAACAATTCTAATAAAAGGAAAAAGGGCACCTTGTCTTTATCTAAAAGTAAGTGATTTTCTCTCCCCCTTTCGAGCCAGTCATCGTATAGAAAACTTCCGTGA 3771 0.4208 MLETSYSSRVFRGVRFVLFGFNPATETKIRFKLVNGGGVDVGQYGGSCTHVIVDKIVNDDPVCVSARNDGKTLVTALWVDHSADIGMPVDAASVMYRPLKDLNGIPGAKNLIVCLTGYLRQDRDDIMTMVGLMGAEFSKPLVANKVTHLICYKFEGEKYELAKRLGTIKLVNHRWLEDCLKEWMLLPEDKYNKSGFELEMTGEEAKDSEEEAEDSKLGQSGGRSGNQNPLSLKCGIATTHGLSRSAREASTAFPDSTGPQDLPEVKHGEDSLTIPGNKNGSDQDLSFHNVDDAKINSHVPNVSRHSSSCQLPDTYVKTSESKNADFPKELGCQDLGITRNANSSEQQHDLPDNSLESKQLASDLRSTSASASGVANSNEKPRAMCYPRKNQREFTLPRILDECSGRGGNNSVNSSSKVEKASKGIKSRAENSGNGNDFFKGDDPFSLLPQKRTNKASSSTKLKSRKMTANARLSIERVSSANAKSQGLNVTPQADDPPEADDYFPVEEDCINNSNTCLISKPAAFTSNSPAFDEPFSRNASSESAQRDNVYQTSPQIAIQSLSESKTNGKLDITGSAMQKIDDNEAEQHNVARNLDCSSPGNKSQNEESASHTNLNLGKGVKLIRKPPRKKSVCKKILGSKPRAGATVGPKISVSLNKTIPLVEAVSFSSGSKEIATCDATKNQGSPQILGVNKTTEQEKVSKYAEDAGGSTDILDDETEAPDDKCEYELGMAFDEDSIPLSKKRNTATEEGSKVICHVTKCEEAMPFQKGTNKTEKQKLPSVVDSSSKLILKHQAKKRPAGRGKTTTVSKELSKSEEAVSGENIPNETVHKPEIEIVVEMSLPADKNDTSAVPKNKSKNFIEEEKENRPIDGEQDIWQGRSEGNRTIKSSVKPGKINSSKLGLNPSRSESNARAKTEAVCFILSGHRLQRKEFQHVIKRLKGRVCRDSHQWSYQATHFISPDPIRRTEKFFAAAASGRWILKTDFLTASSEAGKFLSEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGTFYGMRIIIYGDCIAPPLDTLKRAIKAGDGTILATSPPYTRFFGTEIDYAIVSPGMPRVDLWVQEFLKHEIPCVLADYLVEYVCKPGFSLERHVLYGTHAWAERSYAKLQSRAEEIIEEFAAPEDSNDDDILCQVCGSRDRGDVMLICGDESGSIGCGVGTHIDCCDPSLTHIPEEDWFCPKCCSSRNCSNNSNKRKKGTLSLSKSK*FSLPLSSQSSYRKLP* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0083 1255 Gene3D BRCT domain 2 94 IPR036420 -
Apr8g0083 1255 Pfam BRCA1 C Terminus (BRCT) domain 924 989 IPR001357 -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 880 911 - -
Apr8g0083 1255 ProSiteProfiles BRCT domain profile. 912 1004 IPR001357 -
Apr8g0083 1255 ProSiteProfiles Zinc finger PHD-type profile. 1163 1219 IPR019787 -
Apr8g0083 1255 SMART PHD_3 1165 1217 IPR001965 -
Apr8g0083 1255 Gene3D BRCT domain 1032 1128 IPR036420 -
Apr8g0083 1255 Gene3D BRCT domain 913 1030 IPR036420 -
Apr8g0083 1255 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 594 616 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 201 233 - -
Apr8g0083 1255 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1216 IPR044254 -
Apr8g0083 1255 SUPERFAMILY FYVE/PHD zinc finger 1155 1222 IPR011011 -
Apr8g0083 1255 SUPERFAMILY BRCT domain 8 91 IPR036420 -
Apr8g0083 1255 SUPERFAMILY BRCT domain 920 1008 IPR036420 -
Apr8g0083 1255 Pfam twin BRCT domain 111 175 IPR001357 -
Apr8g0083 1255 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 406 420 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 219 233 - -
Apr8g0083 1255 CDD BRCT_TopBP1_rpt7 921 994 - -
Apr8g0083 1255 Gene3D BRCT domain 99 221 IPR036420 -
Apr8g0083 1255 SMART BRCT_7 1032 1119 IPR001357 -
Apr8g0083 1255 SMART BRCT_7 106 183 IPR001357 -
Apr8g0083 1255 SMART BRCT_7 8 86 IPR001357 -
Apr8g0083 1255 SMART BRCT_7 913 994 IPR001357 -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 875 911 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 594 618 - -
Apr8g0083 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1232 IPR013083 -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 530 552 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 450 492 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 245 287 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 793 824 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 359 500 - -
Apr8g0083 1255 MobiDBLite consensus disorder prediction 359 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0083 Apr-Chr8 693977 700312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0083 129 235 Core DNA Replication Machinery Family AT4G02110 64.486 9.87e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0083 K10728 - gmx:100783461 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0083 8 693977 700312 Apr8g0083 8 693977 700312 ECH