Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0078 ATGGCTCAAGTTTTAAGAGAGACAGAGTTCTCTGTGGTTGCAAGAAACATGGAACAAGTTGTATTGCTGGTAGAGGATTTGAGATCACTATCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAAGCTTGGAAGCTCCTTGTGCTTGTTCTGGGACAGTTAAGTTTGCTCATAGAGATTGCATTCAGACATGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTTCAGCAATATGAACCCGGATACACAGCAGCTCCAAAAAAATCTCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAAGGATTGAGCAAGAACCGTTAAACAGAAGAATAGTGAGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTGCAGATAGAAGCGCGTCTTGCTGCCGATCCCTGGCTTTAGCTTTTACTCTCATATTGCTTGTAAGACATATTTTTGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTAAGAGCCAGTGGAATTATTATACCCATGTACATAATTATTAGGACGATCGGAGCCATTCATAACAATATTAAGCGTCACCATCATCATCAGGATTCTGACGATGACTCATCAATGTCTGATGGAGATGATGAAGAAAATGAGACAGAAGATGATGCAATTTTAAGACATTCATAG 729 0.3909 MAQVLRETEFSVVARNMEQVVLLVEDLRSLSGISRCRICHEEEFESSKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAAPKKSQIADAAMTIRDSLQISRIEQEPLNRRIVSIVEGNNYSECTYAADRSASCCRSLALAFTLILLVRHIFALLTDGMEDYPFTILTVFLLRASGIIIPMYIIIRTIGAIHNNIKRHHHHQDSDDDSSMSDGDDEENETEDDAILRHS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0078 242 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 13 240 IPR033275 -
Apr8g0078 242 SUPERFAMILY RING/U-box 35 88 - -
Apr8g0078 242 Pfam Protein of unknown function (DUF3675) 89 201 IPR022143 -
Apr8g0078 242 MobiDBLite consensus disorder prediction 212 242 - -
Apr8g0078 242 ProSiteProfiles Zinc finger RING-CH-type profile. 28 90 IPR011016 GO:0008270
Apr8g0078 242 CDD RING_CH-C4HC3_MARCH 36 83 - -
Apr8g0078 242 Pfam RING-variant domain 36 83 IPR011016 GO:0008270
Apr8g0078 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 94 IPR013083 -
Apr8g0078 242 SMART ringv_2 35 84 IPR011016 GO:0008270
Apr8g0078 242 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 13 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0078 Apr-Chr8 636768 639596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0078 36 83 C3H Transcription Factor Family AT2G37950 44.898 1.83e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0078 - - gmx:100797029 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0078 8 636768 639596 Apr8g0078 8 636768 639596 ECH
Apr4g0534 4 4443906 4447562 Apr8g0078 8 636768 639596 PCT