Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0060 ATGGAGAAGAAGGAGATGGCTGTGAAGACTGAGGATGCGGTTGGGTCCTCTTCCTTCCCTTGTTACAATTCAAACGGTTATCCATTCTCAAGCGTGTTTGATTTCTCTGAGGTGGAAAAGAACTCTTTAGGGTTTATGGAGTTACTGGGTGTTCAGGACTATAGTCCTCTGCTTGAGTTACCTCAACTATCCAGTTTGAGTGTGCCTCATCACTCTACAGTTAAGCTTCCATCTGATACTGGAAAAGAGTGTTCAGAGGTGTTGAACCAGCAACCTGCCACTCCAAACTCTTCTTCTATTTCATCTACATCCAGCGAGGCAGTTAATGATGAACAGAATAAGACTGTAGACCAAGCAGGAGAAGAAGAAGAAGATGAAGAAGAAGAGCAGAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTATTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGATCTTTCACTGATCCCAGCATTGTAGTGACAACCTATGAAGGACAACACACACATCCAAGCCCAGTCATGCCACGCTCAGGTGTCTCCGCTGGATACGCCACCAACTTTGGTTCAGTTTTGCCACCAGGAAACTACTTATCCCAGTATCAGCACCACAACCCTCATCAACAACAACAACTCCTTGTCAACTCATTGTCCTCTATGGGCTTCCCTTACAACGATTCTTCATCTCCAAAGAACGCCGCTTTTGCTCAAGAGAGACGGCTTTGTAATCCAGGGACGAATGCATTTCTAAGAGACCATGGGCTTCTTCAAGATGTTGTTCCTTCGCACATGTTGAAAGAAGAGTAG 954 0.4528 MEKKEMAVKTEDAVGSSSFPCYNSNGYPFSSVFDFSEVEKNSLGFMELLGVQDYSPLLELPQLSSLSVPHHSTVKLPSDTGKECSEVLNQQPATPNSSSISSTSSEAVNDEQNKTVDQAGEEEEDEEEEQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVMPRSGVSAGYATNFGSVLPPGNYLSQYQHHNPHQQQQLLVNSLSSMGFPYNDSSSPKNAAFAQERRLCNPGTNAFLRDHGLLQDVVPSHMLKEE* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0060 317 SMART WRKY_cls 162 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr8g0060 317 MobiDBLite consensus disorder prediction 88 114 - -
Apr8g0060 317 SUPERFAMILY WRKY DNA-binding domain 154 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr8g0060 317 PIRSF WRKY_txn_fact_IIc 1 317 IPR017396 GO:0003700
Apr8g0060 317 MobiDBLite consensus disorder prediction 88 151 - -
Apr8g0060 317 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr8g0060 317 PANTHER WRKY TRANSCRIPTION FACTOR 1 309 - -
Apr8g0060 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 309 IPR044810 GO:0003700
Apr8g0060 317 Coils Coil 109 129 - -
Apr8g0060 317 Gene3D WRKY domain 147 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr8g0060 317 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0060 Apr-Chr8 511631 513802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0060 27 317 WRKY Transcription Factor Family AT2G47260 48.266 2.86e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr8g0060 WRKY 2.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0060 - - aprc:113872234 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0060 8 511631 513802 Apr8g0060 8 511631 513802 ECH
Apr4g0555 4 4606796 4608762 Apr8g0060 8 511631 513802 PCT