Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0053 ATGGTTTCCACAACGCATTTCCAAGTCACTGTCTTTCTTCTTTCAACTTTATACATTAGCAGCACCTCAGATACACAGGCCGATTTTGATAAGTGGGTATCTTGGAACGTAAAAAATTTTAAGAAAAAAACCATTTTGGAAACCAAATGGAATGTCACTGCACCTGGTCATGATTTGAAGCTGAGGCAGGCTGAGAGTAACAAAGTTAGAATAACAGTTAGCCAAGACGGTGCTGGTGACTTCAAGACCATTACAGAAGCTCTTAATAGCATTCCACCTCGTAACCCTAGGAGAGTCATAATGTCCATCGCGTCTGGTATATATAGGGAGAAGGTCATGATCCCCAGAACATTGCCTTTTATTACATTGTTAGGGGACGCCAGGGATCCACCAACCATTACTGGAAATGATACAGCGTCTGTCACCGGAAGTGATGGGACTCCGTTAGGGACGTTCCATAGTGCAACTGTGGCGGTGGATGCAAGCTATTTTATGGCCATCAACATAAAATTTGAGAACACTGCTCCGCATGTGATTGGATCGAAGGGGGAACAAGGCGTAGCGCTTCGCGTCTCTGGAACCAAAGCTGCTTTTTACAATTGCACTTTCTATGGGGCCCAAGACACTCTCTACGATCACAAAGGCTTTCATTACTTCAACAACTGTTCTATTCAAGGCTCTGTTGATTTCATCTTCGGTTCCGGAAGATCCCTTTACGAGAATTGCTACCTAAATTCGACAACCAAGAAGGTGGCTTCCATCACTGCTCAAAAGCGAACAAATTCGTCATTGGAGAGTGGATTCTCGTTCAAAAACTGCACAGTAACAGGTAGTGGGCAGGTTTATCTTGGAAGAGCATGGGGAGATTATTCCAGAGTTGTTTTTTCTTACACTTACATGGACAAGATAGTTCTCCCCAAAGGATGGAGTGATTGGGGCGACCAAAAGCGTGACTTGAGAGTATTTTATGGAGAATATAAGTGCACTGGGCCAGGAGCTAACTTCACTGGAAGAGTTCCATGGGCACGAGTGCTTTCGGACGAAGAGGCCAAACCTTTTATTGGGTTTCAATTCATTGAAGGGGACACTTGGCTCGTTAGCCCCTAA 1107 0.4444 MVSTTHFQVTVFLLSTLYISSTSDTQADFDKWVSWNVKNFKKKTILETKWNVTAPGHDLKLRQAESNKVRITVSQDGAGDFKTITEALNSIPPRNPRRVIMSIASGIYREKVMIPRTLPFITLLGDARDPPTITGNDTASVTGSDGTPLGTFHSATVAVDASYFMAINIKFENTAPHVIGSKGEQGVALRVSGTKAAFYNCTFYGAQDTLYDHKGFHYFNNCSIQGSVDFIFGSGRSLYENCYLNSTTKKVASITAQKRTNSSLESGFSFKNCTVTGSGQVYLGRAWGDYSRVVFSYTYMDKIVLPKGWSDWGDQKRDLRVFYGEYKCTGPGANFTGRVPWARVLSDEEAKPFIGFQFIEGDTWLVSP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0053 368 Pfam Pectinesterase 71 362 IPR000070 GO:0030599|GO:0042545
Apr8g0053 368 Gene3D - 65 367 IPR012334 -
Apr8g0053 368 ProSitePatterns Pectinesterase signature 2. 224 233 IPR033131 -
Apr8g0053 368 SUPERFAMILY Pectin lyase-like 69 365 IPR011050 -
Apr8g0053 368 PANTHER PECTINESTERASE 16 366 - -
Apr8g0053 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0053 Apr-Chr8 445875 448081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0053 57 366 Carbohydrate Esterase AT5G47500 47.115 4.47e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0053 K01051 - cit:102614801 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0053 8 445875 448081 Apr8g0053 8 445875 448081 ECH
Apr4g0250 4 2115091 2118007 Apr8g0053 8 445875 448081 PCT