Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0052 ATGGAGACAAGGCGTGTTCAGGTTATGAGAAGTGTATTGGATTATTATGATTCATCAGCAACATATGGAAGTGAAGAAGAAATTGTAATAAAGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTTAGCAATTTCGTCAACGTCCACGGCGAAGGTCATTGGAACTCCCTCGCTCGCTCTGCAGGTCTAAAGCGAACTGGTAAAAGTTGTCGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACTCTTCAAGAACAACTCTTAATTCTTGATCTCCATTCTCGCTGGGGCAATCGGTGGTCTAAAATAGCAGAACAATTACCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAGGACGAGAGTGGTGAAGCAAGCAAGGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGGGACGCTGTGCGTTTTGTTTGGATGCCACGTCTTGTGGAGCGGATTCAAGCTTCTTGTGGGTCTGGTCCTGATCAAACCACCCTTTGCAACACTCAAACTCAAAGTGGGGTCAATCCCATAATGTTTTCAATGGTTTCATCGTACTCATCAGGGGTTGATGTTCAACCTCCCTCTCTCTCTCATACAAGTACAAGCACATCTTACAATTTAATGGGTGGTAGTAGCTGGTCATCAGATAGTGTAGAAAAGGGCTTCATGTCAACCCCTCACATTGACATGCAAGCATTTGAACCCGGCAATGGTTTTGGTGATGCAGACTTGTTGTGGACGGATGAAAACATATGGTTCTTGCAGCAGCATCTTGCTGATGATTTATGA 819 0.4408 METRRVQVMRSVLDYYDSSATYGSEEEIVIKKGPWTEEEDSVLSNFVNVHGEGHWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSKQFRDAVRFVWMPRLVERIQASCGSGPDQTTLCNTQTQSGVNPIMFSMVSSYSSGVDVQPPSLSHTSTSTSYNLMGGSSWSSDSVEKGFMSTPHIDMQAFEPGNGFGDADLLWTDENIWFLQQHLADDL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0052 272 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Apr8g0052 272 Pfam Myb-like DNA-binding domain 85 128 IPR001005 -
Apr8g0052 272 Gene3D - 89 130 - -
Apr8g0052 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 79 IPR017930 -
Apr8g0052 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Apr8g0052 272 SMART sant 84 132 IPR001005 -
Apr8g0052 272 SMART sant 31 81 IPR001005 -
Apr8g0052 272 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Apr8g0052 272 CDD SANT 89 128 IPR001005 -
Apr8g0052 272 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Apr8g0052 272 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 265 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr8g0052 272 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Apr8g0052 272 CDD SANT 34 79 IPR001005 -
Apr8g0052 272 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 19 265 - -
Apr8g0052 272 Gene3D - 31 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0052 Apr-Chr8 441705 442732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0052 25 271 MYB Transcription Factor Family AT2G47190 48.872 2.53e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g0052 Myb_DNA-binding 6.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0052 K09422 - gmx:778040 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0052 8 441705 442732 Apr8g0052 8 441705 442732 ECH
Apr4g0564 4 4673815 4674880 Apr8g0052 8 441705 442732 PCT