Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0051 ATGATTGCTCTCATGGGGAAGCTAGGCGACGAAGGCGTTAGGAATAACAACGTGTTAAGATCGAGGAAATACGAGGAAAAAGTTCATCACATGGATTTCTTCATTTACATGATTAATAATACTCCGGAGGAAAAAGAAAAAGAAAAAGAAATCGATATCGGCATCAGAAAGGGTCCATGGACGGTTGACGAGGATACCATTCTCGTCAATTACATCACCACCCACGGTGAAGGTCACTGGAATTCCGTCGCACGTTCTGCAGGCCTGAGGAGAAGCGGGAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGACCCGACGTGCGGCGTGGAAATATCACGCTCCAAGAACAGATATTGATTCTTGACCTTCATTCTCGGTGGGGCAATAGGTGGTCGAAGATCGCTCAGCACTTGCCGGGGAGAACAGACAATGAAATAAAGAACTATTGGAGGACCAGGGTGATAAAGCAGGCGAAGCAGCTCAAGTGCGATGTAAACAGCACACAGTTCAGAGACGCGTTGCGTTACGTGTGGATGCCCCGCTTGCTGGAGCGGGTTCAGCCCACACCGCACACTCTCCAGGGTCCAAGCCCAAACCCATATGGAGCCGGGGTCCAAAACGGTTCAGACTCAGGAACAGAGTGTGCAAAAGCGAACCACTTCTCCTGCGCCGGTGGTGCTTACTCGGACTCATCATCCGGGGAGTTGCAAGTTCCTTCGAATTCGGATCACAGTGATTCTTCGGGTCTTGAAAAAGGGTCGGGTCCATGGGCAGGTTTGAGTAACCAGATTTTTGAACAGGGGAACGGTGAGTCGTTAGAAAGCCTGTGGAACGATGAGAGTATATGGTTTTTGCAGCAACTTTCTGATGAGGTGGATATAAAATACAATTCCCTTCCGTGA 906 0.4901 MIALMGKLGDEGVRNNNVLRSRKYEEKVHHMDFFIYMINNTPEEKEKEKEIDIGIRKGPWTVDEDTILVNYITTHGEGHWNSVARSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSTQFRDALRYVWMPRLLERVQPTPHTLQGPSPNPYGAGVQNGSDSGTECAKANHFSCAGGAYSDSSSGELQVPSNSDHSDSSGLEKGSGPWAGLSNQIFEQGNGESLESLWNDESIWFLQQLSDEVDIKYNSLP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0051 301 MobiDBLite consensus disorder prediction 233 254 - -
Apr8g0051 301 Gene3D - 114 155 - -
Apr8g0051 301 CDD SANT 114 153 IPR001005 -
Apr8g0051 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 108 IPR017930 -
Apr8g0051 301 Gene3D - 57 109 - -
Apr8g0051 301 SUPERFAMILY Homeodomain-like 54 151 IPR009057 -
Apr8g0051 301 SMART sant 109 157 IPR001005 -
Apr8g0051 301 SMART sant 56 106 IPR001005 -
Apr8g0051 301 CDD SANT 59 104 IPR001005 -
Apr8g0051 301 PANTHER MYB TRANSCRIPTION FACTOR 44 292 - -
Apr8g0051 301 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 44 292 IPR044676 GO:0003700|GO:0006355|GO:0043565
Apr8g0051 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 159 IPR017930 -
Apr8g0051 301 ProSiteProfiles Myb-like domain profile. 52 104 IPR001005 -
Apr8g0051 301 MobiDBLite consensus disorder prediction 233 250 - -
Apr8g0051 301 MobiDBLite consensus disorder prediction 189 211 - -
Apr8g0051 301 ProSiteProfiles Myb-like domain profile. 105 155 IPR001005 -
Apr8g0051 301 Pfam Myb-like DNA-binding domain 110 153 IPR001005 -
Apr8g0051 301 Pfam Myb-like DNA-binding domain 57 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0051 Apr-Chr8 414435 420384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0051 37 190 MYB Transcription Factor Family AT1G48000 72.078 5.39e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g0051 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0051 K09422 - gmx:778065 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0566 4 4692815 4695892 Apr8g0051 8 414435 420384 PCT