Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0045 ATGAAAGGGGAAATGGAAGCGACTGTGGTGGATGGAAATGGGACTGAAACAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGTGTTGTTGGACATGGATCGTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCATCCCAATGTTGTTACTTTGAAGCATTGTTTCTTTTCAACTACTGAAAAAGATGAGCTTTATCTTAACTTGGTGCTTGAGTATGTTCCTGAGACTGTTCATCGGGTGATAAGGCACTACAACAAAATGAATCAAAGAATGCCATTGATATATGTGAAACTCTATTTTTACCAGATATGTAGAGCACTAGCTTATATTCACAATTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCATACCCACCAGCTGAAACTTTGTGACTTTGGGAGTGCAAAAGTCTTGATCAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGACATTTGGTCAGCTGGTTGTGTACTTGGAGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGGGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAGGTGTATGAATCCCAACTACACTGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCACAAGATCTTTCACAAACGTTTGCCTCCTGAAGCTGTGGATCTTGTCTCAAGGCTACTGCAATACTCTCCAAATCTCCGATGCTCAGCTGTGGAGGCCCTGGTTCATCCATTCTTTGATGAGCTGCGTGATCCAAATACTCGCCTACCCAATGGGCGGTTCCTTCCTCCGCTATTTAACTTCAAAGCCAATGAGCTTAAGGGAGTGCCTTTGGAGATGCTGGTGAAATTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGGGTCATAG 1125 0.4302 MKGEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLIKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIRCMNPNYTEFKFPQIKAHPWHKIFHKRLPPEAVDLVSRLLQYSPNLRCSAVEALVHPFFDELRDPNTRLPNGRFLPPLFNFKANELKGVPLEMLVKLIPSHARKQCALFGS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0045 374 CDD STKc_GSK3 33 325 IPR039192 -
Apr8g0045 374 Gene3D Phosphorylase Kinase; domain 1 22 117 - -
Apr8g0045 374 SUPERFAMILY Protein kinase-like (PK-like) 37 347 IPR011009 -
Apr8g0045 374 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 4 372 - -
Apr8g0045 374 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Apr8g0045 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Apr8g0045 374 Pfam Protein kinase domain 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0045 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 4 372 - -
Apr8g0045 374 ProSiteProfiles Protein kinase domain profile. 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0045 374 Gene3D Transferase(Phosphotransferase) domain 1 118 366 - -
Apr8g0045 374 SMART serkin_6 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0045 Apr-Chr8 371908 376830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0045 44 330 Core Cell Cycle Gene Families AT1G76540 35.452 1.79e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Apr8g0045 Pkinase 7.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0045 K00924 - gmx:100788046 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0045 8 371908 376830 Apr8g0045 8 371908 376830 ECH