Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0035 ATGTCCAAAGGGAAAGTGATTGTCTCTGGGGTTTCGCTCATCCTAGTGGTGGGTGTTGCCATAGGTGTTGTTGTTGTTGTTAACAAAAAGGACTCATCTGATCCTGCAGTAGCAGCACATCAAAAATCTGTGAAGGCCATGTGCCAAGGCACCGAAGACCCCAATCTTTGTCATGATACTCTTAACTCTGTGAACAGCGCTAACGCCTCAGACCCAATGGCTTACCTATCTGCTGCAGTGGAAGCAACTTCAAAAACCATTATCCAAGCCTTGAACATGAGTGACAGGCTCAGTGTGGAACATGGCAACAATAACAATGCTCCTGGAGTCAAAATGGCCCTTGATGATTGCAAGGACTTAATGCAATTCGCCATGGACAGCATCGAATCCTCGGCTAACTTGGTTCGTGACAACAATATTCAAGCCTTGCATGACCAAACCCCAGACTTCAGAAATTGGTTGAGTGCAGTTATCTCGTACCAACAGTCATGCATGGAAGGGTTTGATAATGGAACAAACGGTGAGGACAAGGTTAAGGAACAGTTGCAAACGCAAAGTTTGGACCAAATGGGGAAGCTCACTGGCATAACACTTGACATTGTCACTAATTTATCTAACATTCTTCAGAGCTTTGGCTTACAGTTGGATTTGAAGCCTGCTTCTCGTCGTCTTCTGGAGGCTGAGAATGCTGATGGTGAAGAGTTCCCATCGTGGTTCTCTGCTTCCGATCGTAAGCTGTTGAGTAAGGGAGTTGAATCAATACCACCGAACGCAGTTGTTGCCCAAGATGGTAGTGGTAAATTTAAAACCATTAAGGATGCGGTTGCCTCTTACCCTAAAGGCTTCAAAGGCAGATATATTATTTATGTTAAGGCTGGGATCTATCACGAGTACATCATCGTTCCTAAATCTGCAGCTAATATTCTTATGTATGGGGATGGCCCTACAAAGACCATTGTCACTGGTAACAAAAACTTCGTAGATGGTGTCAAGACCATGCAAACTGCCACCTTCGCAAATGTTGCACCTGGATTCATTGCAAAGTCAATGGCATTCGAGAACACCGCTGGTGCTGCTAAGCACCAAGCAGTGGCATTCAGAAACCAGGGAGACATGTCGGCGTTCTTCGATTGTGCCATGCACGCTTTCCAAGACACCTTGTACGTTCAAGCCAACCGTCAATTCTACCGCAACTGTGAAATCTCGGGCACCATAGACTTCATCTTCGGAACATCTGCAACCATTATCCAGAACTCAAGAATCATCGTAAGAAAGCCAGGCCCTAATCAATTCAATACAGTGACCGCAGATGGCACCGCCAAACAGAGCATGACCACAGGAATTGTGATTCAGAACTGCGAGATAACCCCAGAGAGGGATTTGTTCCCTGCAAGGTTCCAAGTGAAATCGTACTTGGGGAGGCCGTGGAAGCAATATTCTAGAACAGTGGTTATGGAATCGACCATTGGAGACGTAATTAGCCCAGAAGGATGGACTGTTTGGAGTGGGAACCAGTTTCTTGACACGTTGTACTATGCTGAGTATGACAACGTTGGACCTGGTTCTAATCTTCAAGGAAGGGTCAAGTGGAAGGGTTATCATCCCAATATTAATAAGAATGAAGCTGCACAATTCACTGCTGGTCAATTCCTTAGAGCTGGACCAGGTGGAAAAGCTGATGATTGGTTGAGGACTACTGGCATTCCTTATGCTATTGGGTTCGCCAAAGCTTGA 1734 0.4562 MSKGKVIVSGVSLILVVGVAIGVVVVVNKKDSSDPAVAAHQKSVKAMCQGTEDPNLCHDTLNSVNSANASDPMAYLSAAVEATSKTIIQALNMSDRLSVEHGNNNNAPGVKMALDDCKDLMQFAMDSIESSANLVRDNNIQALHDQTPDFRNWLSAVISYQQSCMEGFDNGTNGEDKVKEQLQTQSLDQMGKLTGITLDIVTNLSNILQSFGLQLDLKPASRRLLEAENADGEEFPSWFSASDRKLLSKGVESIPPNAVVAQDGSGKFKTIKDAVASYPKGFKGRYIIYVKAGIYHEYIIVPKSAANILMYGDGPTKTIVTGNKNFVDGVKTMQTATFANVAPGFIAKSMAFENTAGAAKHQAVAFRNQGDMSAFFDCAMHAFQDTLYVQANRQFYRNCEISGTIDFIFGTSATIIQNSRIIVRKPGPNQFNTVTADGTAKQSMTTGIVIQNCEITPERDLFPARFQVKSYLGRPWKQYSRTVVMESTIGDVISPEGWTVWSGNQFLDTLYYAEYDNVGPGSNLQGRVKWKGYHPNINKNEAAQFTAGQFLRAGPGGKADDWLRTTGIPYAIGFAKA* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0035 577 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 204 IPR006501 GO:0004857
Apr8g0035 577 Pfam Plant invertase/pectin methylesterase inhibitor 43 200 IPR006501 GO:0004857
Apr8g0035 577 Pfam Pectinesterase 257 552 IPR000070 GO:0030599|GO:0042545
Apr8g0035 577 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Apr8g0035 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 206 IPR035513 -
Apr8g0035 577 SMART PMEI_2 39 200 IPR006501 GO:0004857
Apr8g0035 577 PANTHER PECTINESTERASE 4 575 - -
Apr8g0035 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 205 IPR035513 -
Apr8g0035 577 Gene3D - 251 574 IPR012334 -
Apr8g0035 577 PANTHER PECTINESTERASE 4 575 - -
Apr8g0035 577 CDD PMEI-like_3 46 206 - -
Apr8g0035 577 SUPERFAMILY Pectin lyase-like 255 571 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0035 Apr-Chr8 317565 319625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0035 6 574 Carbohydrate Esterase AT3G05610 41.003 6.62e-141 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0035 K01051 - gmx:100789650 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0587 4 4871649 4873503 Apr8g0035 8 317565 319625 PCT