Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0034 ATGGAAAGTAAAGTACTTGTCTCCGCCGTTTCTCTGATTCTCGTAGTGGGTGTTGCTCTGGGCGTTGTTGCTCTTGTCCGCACCAGCCCAAGCGGCGACGAAAACAACCACGATTTGAACACTCACTCCAAGGCTGTTGCAGCGGTATGCCAAAACACCGATGACCACCAGCTCTGCACCGACACACTCGGCAATGTCAACACCTCAGACCCAACCGATTACATCAAAACCGTTGTGCAAACCTCCATGGACAGCGTCATCAAGGCCTTCAACATGAGCGACAAGCTCACCGTCGAAAACAACCAGAGCAACAATACCGTCAAAATGGCCCTCGAAGACTGCAAAGACTTGTTACAGTTCGCCATCGACGAATTACAGGCCTCAAACATCCTAGTTAACGACAACAACATTAACAACGTTAACGACCGTGCCACAGACCTCAAAAACTGGTTGGGCGCTGTGATTGCGTACCAGCAATCGTGCCTTGATGGGTTCGACACGGACGGTGAGAAAAAGGTGCAGTCACAGTTACAAACGGGTAGTTTAGACAACGTTGGAAAACTAACTGCGTTAGCACTTGATGTGGTGTCGGGTATATCGCAAATATTGTCTGCTTTCAACTTGACTTTGAGTTCGAAACCTTCCTCTCGTCGGCTTCTTGAAGTGGATCATGATGGGTATCCTTCTTGGATGGCCGGTTCTGATCGCAAGCTCTTGGCTGCTATGAATAAAGGAGATTCCGTCACACCTAATGCAGTGGTTGCCAAAGATGGTAGTGGCCAATATAAGACTGTTTTGGATGCTATCAATGCTTATCCCAAGAACCATCAAGGTAGATTCGTTATTTACGTTAAGGCTGGTACCTATGATGAGTACATTACCGTTGACAAGAAGAAGCCTAATATTCTAATATACGGTGATGGCCCCACAAAGACCATTATCACTGGAAGTAAAAATTTTATCGATGGTTGGAAGACAATGAGATCTGCTACCTTCGCCACCGTTGCTGAAAATTTCATTGCAAAGTCAATGGCATTCGAGAACACCGCTGGAGCGAGCAAGCACCAGGCAGTGGCACTTCGCGTGCAAGGTGATCGCTCAGCTTTCTTTGACTGCGCCATGCACGGTTTTCAAGACACGTTATACGCACACGCCCACCGTCAATTCTACCGCAACTGCGAAATCTCCGGAACCGTTGACTTCATCTTCGGCTACGCCACGACGTTAATCCAGAGCTCCAAAATCATAGTGCGTAAGCCTGAGCCAAACCAACAAAACATAGTAGTAGCCGATGGAACGGACCAAAAGAACATGCCCACAGGGGTAGTGCTTCAGAACTGTGAGATATTGCCAGAAGCAGCATTGGCACCCGAGAAGTTGAAGGTGAGATCGTACTTGGCGAGGCCATGGAAGGCATATTCAAGGGCAATTTTCATGGAAAATACGATTGGTGATTTGATTCAGCCAGATGGGTTTCTTCCATGGCAAGGCACTCAGTTCCTTGACACATGTTTCTTTGCTGAGTATGCTAACAACGGATTGGGTGCCAATGCGCAAAACAGGGTCAAGTGGGGTCGTGGGGTTCTTAGTAAGACTGATGCTGCTAAATACACTGCTGAACAATGGCTCCAAGCCAGCACATGGCTCCCCGCCACTGGCATTCCTTTCGATCTTGGCTTCACTAAAGCTTGA 1692 0.4799 MESKVLVSAVSLILVVGVALGVVALVRTSPSGDENNHDLNTHSKAVAAVCQNTDDHQLCTDTLGNVNTSDPTDYIKTVVQTSMDSVIKAFNMSDKLTVENNQSNNTVKMALEDCKDLLQFAIDELQASNILVNDNNINNVNDRATDLKNWLGAVIAYQQSCLDGFDTDGEKKVQSQLQTGSLDNVGKLTALALDVVSGISQILSAFNLTLSSKPSSRRLLEVDHDGYPSWMAGSDRKLLAAMNKGDSVTPNAVVAKDGSGQYKTVLDAINAYPKNHQGRFVIYVKAGTYDEYITVDKKKPNILIYGDGPTKTIITGSKNFIDGWKTMRSATFATVAENFIAKSMAFENTAGASKHQAVALRVQGDRSAFFDCAMHGFQDTLYAHAHRQFYRNCEISGTVDFIFGYATTLIQSSKIIVRKPEPNQQNIVVADGTDQKNMPTGVVLQNCEILPEAALAPEKLKVRSYLARPWKAYSRAIFMENTIGDLIQPDGFLPWQGTQFLDTCFFAEYANNGLGANAQNRVKWGRGVLSKTDAAKYTAEQWLQASTWLPATGIPFDLGFTKA* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0034 563 PANTHER PECTINESTERASE 6 561 - -
Apr8g0034 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Apr8g0034 563 CDD PMEI-like_3 48 200 - -
Apr8g0034 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Apr8g0034 563 Gene3D - 245 560 IPR012334 -
Apr8g0034 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 200 IPR035513 -
Apr8g0034 563 SMART PMEI_2 41 195 IPR006501 GO:0004857
Apr8g0034 563 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 194 IPR006501 GO:0004857
Apr8g0034 563 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Apr8g0034 563 Pfam Pectinesterase 251 545 IPR000070 GO:0030599|GO:0042545
Apr8g0034 563 PANTHER PECTINESTERASE 6 561 - -
Apr8g0034 563 SUPERFAMILY Pectin lyase-like 250 558 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0034 Apr-Chr8 312641 315589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0034 5 560 Carbohydrate Esterase AT3G05610 40.357 2.44e-140 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0034 K01051 - gmx:100820142 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0590 4 4886026 4887880 Apr8g0034 8 312641 315589 PCT
Apr8g0034 8 312641 315589 Apr4g0587 4 4871649 4873503 PCT