Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0022 ATGGGCAAAGCATCTAGTTCTTCCTCCTCTTCTATCACCAGCAACAGAAACCCTTCTAATTCTACTGCATCCTCTCTCACACAGCAAAATTCTGAAGAACTTCGCACAGATCTTAGGCTTGGACTAGGCATTTCCACCACTCAACATGTTGGTTCTTCTATTTCAAGGAGGCACTGGCAACCAATACAGCCACATGTGAGTAGTTTACAAAGTGGTGAAGTAAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGAATTCCGATTGGTAGAAAACTCAACTTGTTAGCTCATGATGGGTACCACGAGTTAGTGAAGACGCTTGAACAAATGTTTGACACTACCGTCCTCTGGGGGAGTGAGATGGATGGTGTGCAATCAGAGAGGTGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGATGTTCCTTGGGAGATATTCTTATCATCTGTAAAGAGGTTGAAGATCACAAGGGTTGATGCATTAGGGGGTTAA 528 0.4337 MGKASSSSSSSITSNRNPSNSTASSLTQQNSEELRTDLRLGLGISTTQHVGSSISRRHWQPIQPHVSSLQSGEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTVLWGSEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEIFLSSVKRLKITRVDALGG* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0022 175 Pfam AUX/IAA family 74 169 IPR033389 -
Apr8g0022 175 Gene3D - 76 174 - -
Apr8g0022 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 174 IPR003311 GO:0005634|GO:0006355
Apr8g0022 175 MobiDBLite consensus disorder prediction 1 32 - -
Apr8g0022 175 PANTHER AUXIN-INDUCED PROTEIN 2 174 - -
Apr8g0022 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Apr8g0022 175 SUPERFAMILY CAD & PB1 domains 78 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0022 Apr-Chr8 231752 233505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0022 86 167 B3 DNA Binding Superfamily AT4G23980 37.805 2.97e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr8g0022 AUX_IAA 4.9e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0022 K14484 - gmx:100781660 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0602 4 4979706 4980387 Apr8g0022 8 231752 233505 PCT