Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0019 ATGGCTGAGAAGATGCATGATTCCACCCGACCAGGGATGACAAGAAGTTCCTCCTACCTAGATTCCATTTATGGCAACGGTTCCCTTGAGTTGGTATGGGAGAATGGTCAAATTCACGTGCAAGGAGGCTCATCCTCAAGTGTCACACGAAAGACTCCCTTGTGCGATGGGTATTCAATAAAAGCAATTGAAGAAGGTGGCTGCATTGGCAAAAGTGCAAGGTTAAGCACATTATACTCCCTTATGGACTTGCCAGTTCAAAGGAACTCTGAGTTGGACCATTCACAACGAAATTCTCATCAAAGCAATTATCGAAATTCCCCTCAACTTCATTTGAAATTCTCCAAAAGCAAGAGTTTCGATGAACATAAAGATGGTTGCGCAAACTCTAGAGCAATAGGACCTCATCAAACAAGAAGTTCACAGAAACAAGACTTGGCTCCGGTGATTGACTCACCTAAAGGATCGTATGCTCTCACACGACTTTACGGACAAAAACGTTTGACTTCTGATGCGTCAAACCCAGTCTCCTTTGTTCCAAGAAATCAAGAAACACCTCCTGACGAGGAATCTGAAGCCGTGGGTCGTAACAGTGCTCCTTGTATTACTATTCACAGATCTCATGCTCACTATTATAATCGAACCTCAAGCTCAACAGGACTTAGAGCAAAGGGAAAAGCTGATACTAACTATTGTGATCAAGCCTTGTTAGATTCTTCTTCCCTATGCTCCCTTGAAGCCTCAAACAATGCAAATCTTTGTGGCAGGAAACATGATGACACCGACGACTCAATGTATTTAAGCGATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTCGGGATGGCACCAGAGTCAAGAGAAACAGGAATGCAGAGACTCATAATTTATGCGAAAAGAAGCGAAGAGATAAGATCAACAAGAGAATGCGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGACGGACAAAGCTTCAATGCTTGACGATGCCATTGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATTATGTCAATGGGTGCTGGGTTTTGCATGCCTCTTATGATGTTACCTACTGCCACTCATCATATGATGAGCACACCACATTTACATCAGTTAATGGGAGCAGGAATGGGCTTCAGGCCAGGCACAACCATCCCTTGTAGCCTACCTCAGTTCCCTATTACACCTTTGCCTGGTATCACTGACAATAGAGCTAGAATGTTTGGTTTCCCTAACCAAGTGCCACCCATGCCCATTTCTCATGCACCTTTCATTCCTATGATTGGAAATCCTTCTTCACAACCCTTTCTGCCAACTAACACACCTACCAACGTGGCAAAAAACCCAGCTTCTTCCCAGTTAACTCCTAAGGTCTCAATCCCCATGAACTCATATCTCAGTGGACAGGCTGAAAATGCAACAAAGCAAGCACCGAATCAAATTTTCTTTCCCCACTAG 1476 0.4343 MAEKMHDSTRPGMTRSSSYLDSIYGNGSLELVWENGQIHVQGGSSSSVTRKTPLCDGYSIKAIEEGGCIGKSARLSTLYSLMDLPVQRNSELDHSQRNSHQSNYRNSPQLHLKFSKSKSFDEHKDGCANSRAIGPHQTRSSQKQDLAPVIDSPKGSYALTRLYGQKRLTSDASNPVSFVPRNQETPPDEESEAVGRNSAPCITIHRSHAHYYNRTSSSTGLRAKGKADTNYCDQALLDSSSLCSLEASNNANLCGRKHDDTDDSMYLSDNDEEPEDVVKEKPARDGTRVKRNRNAETHNLCEKKRRDKINKRMRALKELIPNCNKTDKASMLDDAIEYLKTLKLQLQIMSMGAGFCMPLMMLPTATHHMMSTPHLHQLMGAGMGFRPGTTIPCSLPQFPITPLPGITDNRARMFGFPNQVPPMPISHAPFIPMIGNPSSQPFLPTNTPTNVAKNPASSQLTPKVSIPMNSYLSGQAENATKQAPNQIFFPH* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0019 491 MobiDBLite consensus disorder prediction 133 147 - -
Apr8g0019 491 Pfam Helix-loop-helix DNA-binding domain 296 342 IPR011598 GO:0046983
Apr8g0019 491 Coils Coil 491 491 - -
Apr8g0019 491 PANTHER TRANSCRIPTION FACTOR PIF3 1 488 IPR044273 GO:0003700|GO:0006355
Apr8g0019 491 MobiDBLite consensus disorder prediction 272 289 - -
Apr8g0019 491 MobiDBLite consensus disorder prediction 115 129 - -
Apr8g0019 491 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 488 - -
Apr8g0019 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Apr8g0019 491 MobiDBLite consensus disorder prediction 171 195 - -
Apr8g0019 491 SMART finulus 299 348 IPR011598 GO:0046983
Apr8g0019 491 MobiDBLite consensus disorder prediction 254 289 - -
Apr8g0019 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 354 IPR036638 GO:0046983
Apr8g0019 491 MobiDBLite consensus disorder prediction 90 151 - -
Apr8g0019 491 CDD bHLH_AtPIF_like 293 355 - -
Apr8g0019 491 Gene3D - 289 350 IPR036638 GO:0046983
Apr8g0019 491 MobiDBLite consensus disorder prediction 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0019 Apr-Chr8 208096 210059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0019 180 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 36.770 2.27e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0019 HLH 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0019 K12126 - gmx:100818543 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0019 8 208096 210059 Apr8g0019 8 208096 210059 ECH
Apr4g0101 4 921907 927935 Apr8g0019 8 208096 210059 PCT
Apr4g0603 4 4986547 4989567 Apr8g0019 8 208096 210059 PCT