Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1871 ATGAAGAGCATGAACGACGATGCTTCCACACAAGATCTCGACCCTCAAAGCGACCACAGCTCCGATTATTTGACTCAACCACACCCTCACCCTCAGGTTCGCCGTCCCCGAGGTTTCGCCGCCGCCGCTGCTGCGGCGGCGACGGCCACTAATTCCGGCGCTAAGGGAAAGAAAGAGAGAGAAAAGGAGAAGGAGCGCACCAAGCTCCGTGAGCGACACCGTCGAGCCATCACGAGCCGCATGCTTGCTGGTCTCCGTCAGTACGGGAATTTCCCTCTGCCGGCGCGTGCTGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGTTGGGTTGTCGACGCCGATGGCACCACCTATCGCCAGTGTCCCCCTCCTTCTCACATGGGTTCGTTTGCGGCACGGTCAGTTGAAAGTCAACTCTCTGCTGGCTCTTTGAGAAATTGCTCTGTTAAGGAAACGCTTGAGAATCGGCCATCTGTGCTTAGAATTGACGAATGCTTGTCGCCTGCGTCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATACAAATGCTAGCCCCATCAATTCTGTTGAATGCTTGGAGGCTGATCAGCTTATGCAAGATATACATCCTGGGGTGCATGAAAATGACTTTACTGGCACGCCATACGTTCCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCGAGTTGATTGATCCAGAAGGCATTAGGCAGGAGCTAATCCATATCAAGTCTTTAAATATAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGTTGGAACCCTCAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATCATTAGAGAATTCAAGCTGAATTTACAGGTTGTTATGGCATTCCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTGCCCTTCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGAAGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGTGTACTCAAAGGAAGAACTGGTATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGAACAGAGTTTGATGATCTGTTTGCTGAAGGTCTGATTTCTGCTGTTGAAATTGGACTTGGAGCATTGGGGGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGCAGAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGTCATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGAGAGGTGATTACGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACGCTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTTTATTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAGAAAACATGCCGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCCAACGAATCATTGGTTGATCCAGAGGGTTTGAGTTGGCAGGTATTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGCTGGAGAGAATGCACTTCTTTGCTATGATAGAGAAGGGTACAAAAGATTGGTTGAGATGGCAAAGCCCAGAAATGACCCTGATCGCCGGCACTTCTCATTCTTTGTTTATCAGCAACCATCTTTGCTACAGGGAAATGTTTGTTTGTCCGAATTGGATTTCTTCATCAAATGCATGCACGGTGAGGTGACAGATCTGTAA 1971 0.4602 MKSMNDDASTQDLDPQSDHSSDYLTQPHPHPQVRRPRGFAAAAAAAATATNSGAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAARSVESQLSAGSLRNCSVKETLENRPSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINSVECLEADQLMQDIHPGVHENDFTGTPYVPVYVKLPAGIINKFCELIDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLNLQVVMAFHECGGNDSSDALIALPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGALGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHAVTMKFVCLGFHLSSQEANESLVDPEGLSWQVLNSAWDRGLMAAGENALLCYDREGYKRLVEMAKPRNDPDRRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEVTDL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1871 656 Gene3D Glycosidases 215 655 - -
Apr7g1871 656 MobiDBLite consensus disorder prediction 54 71 - -
Apr7g1871 656 Pfam Glycosyl hydrolase family 14 241 623 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 SUPERFAMILY (Trans)glycosidases 219 653 IPR017853 -
Apr7g1871 656 MobiDBLite consensus disorder prediction 1 27 - -
Apr7g1871 656 MobiDBLite consensus disorder prediction 1 71 - -
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 259 273 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 280 298 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 302 323 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 395 417 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 468 487 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 502 518 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 519 530 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 537 560 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 575 597 IPR001554 GO:0000272|GO:0016161
Apr7g1871 656 Pfam BES1/BZR1 plant transcription factor, N-terminal 55 201 IPR008540 -
Apr7g1871 656 PANTHER BETA-AMYLASE 8 59 654 - -
Apr7g1871 656 PANTHER - 59 654 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1871 Apr-Chr7 25973258 25981360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1871 12 655 Glycoside Hydrolase AT5G45300 67.313 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Apr7g1871 Glyco_hydro_14 8.8e-86 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1871 K01177 - gmx:100777004 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1871 7 25973258 25981360 Apr7g1871 7 25973258 25981360 ECH