Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1870 ATGGGGTCAAGTGGCAGCAAAGCCACGTCATCATCGTCTTCGGGTAGTTTCAGGAAGGGTCGATCTAAGGGGCGTAGAGGTTTCCCATCTTATTGTTTAGGAACATCTTCTGGATCTCGTGACATTGATAATGATGACCAGGTTTGTGATCAGAATAAAGTAAGTGGAAGTGATGTTACATACTCTGATGGGAATGAAATTATAGACTCAGATGAAGTGAAGACAGAGTCTTTTAGAAAGGTTAAATCTGATGAAGTATCTTGTATGCCTTCTAACATTGACCTTGATGAGTGGAGTCATGCTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAACTCAGTCCATGAACCCTTCAAGTCGATTTCTTTCTCGCTTCAGCCTTGTGCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTAGGGTCATCTAGGCCCTGCCCTGTTTCTTCGGGAGGTCTCTCAGTATTTAACAATGAAGATGACCTTAGCGTGCATCCTGGGCCACCTGCCAGCTTGATTAATAGAAATGAAATTCAACAATGTGGTGAATTGCTTAATGCGTCTTTTGTTAGTCAAGGGAGGCCTTTACAGTACCATGAAAATGCTTCTAATAATTTAAGATCTAATACTCCTGCATCGGTTTCGCCGGGCAACTTGCCGAGCAGTCCTACACTTTCTTCTATACAAGATGTGGTTGGAGGTGGAGATGGTACGAGAGCAGTGCCAGATGTGAACTTTTTTTCTCCTAGAGTTCATACAGATACAGAAAATACTGAGACTAGACATACTGATAGACGAAATGGTGCTCGAGAACCTGTTGAACGTAATGTTCGTTTTAGCCGAACTTTGAGTGTTGGAAGGCTTCGTGATAGAGTTCTCCGCCGATCAGCAGTATCTGACTTCAGCTTTTGCCCTCTGCAACAAGAGAGAGAAGTGAGAGATGCTAGTCAAGATAATGGCAGACGAGTAGGGGAGAGAGACACACGAGTGTCACCATCTGGTCGTAATGTTGCAAATTCTTCTGCTACATCTGGATATCCTCAACCTAGTATGTCAAGCTCCTTGTTTGGTATCCAAGACTATGAAGTTGAGACTTCACGATCTAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCATCGAAAGGAGAAGAAGAATTCGATCCCAGGTCCGTGCACTTCAGCGGCTCGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCGTGTATCTTGTCTGGTCAACATAGAAATGGTCGTTGCACATGCCGAATCAGTGGTCGTGATACCAATTCGAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTACTGAAGTTGTGGAATCCTTGCCTGTAAAATTGTATACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTACGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCACGAGTTTCATACAACATGTATAGACAAATGGCTGAAGGAGATTCACAGGGTGTGCCCACTATGTCGAGGGGACATTTGTATATCTGATTCACTGCCAACGGAGAACTAA 1713 0.4349 MGSSGSKATSSSSSGSFRKGRSKGRRGFPSYCLGTSSGSRDIDNDDQVCDQNKVSGSDVTYSDGNEIIDSDEVKTESFRKVKSDEVSCMPSNIDLDEWSHAASRTGSSSAHSSSTQSMNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSGGLSVFNNEDDLSVHPGPPASLINRNEIQQCGELLNASFVSQGRPLQYHENASNNLRSNTPASVSPGNLPSSPTLSSIQDVVGGGDGTRAVPDVNFFSPRVHTDTENTETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSAVSDFSFCPLQQEREVRDASQDNGRRVGERDTRVSPSGRNVANSSATSGYPQPSMSSSLFGIQDYEVETSRSRETRYQDLLEHRSNFIERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISGRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPTEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICISDSLPTEN* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1870 570 MobiDBLite consensus disorder prediction 254 278 - -
Apr7g1870 570 SMART ring_2 515 556 IPR001841 -
Apr7g1870 570 SUPERFAMILY RING/U-box 493 563 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 337 358 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 316 334 - -
Apr7g1870 570 CDD RING-H2_PA-TM-RING 514 557 - -
Apr7g1870 570 Pfam Ring finger domain 514 557 IPR001841 -
Apr7g1870 570 ProSiteProfiles Zinc finger RING-type profile. 515 557 IPR001841 -
Apr7g1870 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 561 IPR013083 -
Apr7g1870 570 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 49 64 - -
Apr7g1870 570 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 570 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 1 18 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 259 278 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 315 358 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 1 68 - -
Apr7g1870 570 MobiDBLite consensus disorder prediction 206 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1870 Apr-Chr7 25966318 25972329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1870 227 564 C3H Transcription Factor Family AT5G45290 61.449 1.41e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1870 - - gmx:100815830 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1870 7 25966318 25972329 Apr7g1870 7 25966318 25972329 ECH